Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01388 ATGGCTCTCTCTCTTTTGTATCCCCTTCTTCTTGCCACCTTTCTTTTCATGCAAACTCTGGCAGATACTTCATTTGTTCAATCTCGTGCAGCATTTTACCCAAACTCTCAAGAAAATGGCACAGATGTTGGTGCATGTGAATTTGGTTCCTTTGGTGCTACGGTTAATGGTGGCGACGTATCAGCTGCATCTAATCTTTATAGAAATGGTGTTGGCTGTGGTGCCTGTTACCAAGTAAGATGTAGCAATAGTGCTTTATGCTCAGACAACGGTGTGACTGTGGTTATAACTGACTCAGGCTCAGGTCATAACACTGATTTCATTCTTAGCCAACGAGCCTTTGGTAGAATGGCTCTCAACACTGACGCTGCTGCATCTCTATTAGCTCTTGGCGTACTTGATATTCAATATAGACGTGTCTCATGCAGCTACCCAAACAAAAACATTACAGTTAAGATACATGAGAGCAGCAACAACCCTCACTATTTGGCTTTTGTCATATGGTTTCAACAAGGAAGTAGAGACATAACTGCTGTTCAGCTTTGTGAGactcagaactttgtgtgcaagttactggaccggagtcatggagcagtttggaccactacagctccaccaagtggacctttgactttgaGGATGTTGTTTAGCCCTGAAGAAGAGGGAGAAGAAACATGGGTGGTTCCTGTTAATAACATACCACAAGACTGGAAGGCTGGACAAACATACGACTTAGGGGTACAAGTGGACCAATAG 756 0.3796 MALSLLYPLLLATFLFMQTLADTSFVQSRAAFYPNSQENGTDVGACEFGSFGATVNGGDVSAASNLYRNGVGCGACYQVRCSNSALCSDNGVTVVITDSGSGHNTDFILSQRAFGRMALNTDAAASLLALGVLDIQYRRVSCSYPNKNITVKIHESSNNPHYLAFVIWFQQGSRDITAVQLCETQNFVCKLLDRSHGAVWTTTAPPSGPLTLRMLFSPEEEGEETWVVPVNNIPQDWKAGQTYDLGVQVDQ 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01388 251 Pfam Lytic transglycolase 63 137 IPR009009 -
Gma17g01388 251 Gene3D - 144 249 IPR036749 -
Gma17g01388 251 Gene3D - 13 143 IPR036908 -
Gma17g01388 251 SUPERFAMILY Barwin-like endoglucanases 13 146 IPR036908 -
Gma17g01388 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 147 IPR007112 -
Gma17g01388 251 Pfam Expansin C-terminal domain 149 227 IPR007117 -
Gma17g01388 251 PANTHER EXPANSIN-B3 8 250 - -
Gma17g01388 251 PANTHER POLLEN ALLERGEN ORY S 1, PUTATIVE-RELATED 8 250 - -
Gma17g01388 251 SUPERFAMILY PHL pollen allergen 147 244 IPR036749 -
Gma17g01388 251 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Gma17g01388 251 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576
Gma17g01388 251 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Gma17g01388 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 161 245 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01388 Gma-Chr17 12852727 12854959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01388 5 244 Expansin Gene Family AT4G17030 42.739 2.95e-58 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01388 - - gmx:100791557 502.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01388 17 12852727 12854959 Gma05g00650 05 7177904 7180178 GST
Gma01g02045 01 55834197 55836086 Gma17g01388 17 12852727 12854959 PCT
Gma11g00369 11 3021842 3023878 Gma17g01388 17 12852727 12854959 PCT
Gma17g01388 17 12852727 12854959 Gma01g02045 01 55834197 55836086 PCT
Gma17g01388 17 12852727 12854959 Gma11g00369 11 3021842 3023878 PCT