LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma17g01364	ATGGTCAACCTCAACAATGAGGTCAAGCGGCTGAGAGAAGAAGTCAATGTCATCAAAAGATGCTTAAAGGCGTTGAAGGAGGAGGTTGTGGATGAAGTTGATCCCATTGACACTGAAATGAACCTTTCCACTAATCAAATAAACCCAAATTTTGTGGGTCACGAAGGCAACCAAAGAAACTTTGGGGTTAGGGCTAATGCCAATCTTGGTGATGAAGGAGAAAGAAAGAAAGAAGTAGCTTTTTGGAGGGTTGACATGGAAGAACGGTATGAGCCATTGAAGGAGCTTGGTGCTGGGAATTTTGGTGTGGCAAGGTTGGCAAAAGACAAGAAAACTGGAGAGCTTGTTGCGGTCAAATACATAGAGAGGGGCAAAAAGATTGATGAGAATGTTCAGAGGGAGATAATTAACCACCGATCTTTAAGGCATCCAAATATAATCAGGTTTAAAGAGGTGTTACtgacccctacacatttagctatcgtcttggagtatgcttcaggtggtgaactttttgagaggatttgtactgctggtcgatttagcgaagatgagGCAAGATATTTCTTCCAGCAGCTAATATCTGGGGTTAGCTACTGTCATTCAATGGAAATTTGTCATAGAGATCTAAAATTGGAAAACACTCTCTTGGATGGAAATCCATCTCCTCGGCTTAAAATTTGTGACTTTGGTTATTCCAAGTCTGCTCTACTGCACTCTCAACCTAAATCAACAGTTGGAACTCCTGCATACATTGCTCCGGAGGTTCTGTCGCGAAAGGAGTATGATGGAAAGATTTCAGATGTTTGGTCCTGTGGAGTGACTCTTTATGTCATGTTAGTTGGTGCATACCCATTTGAAGATCCAGAAGATCCTAGAAATTTCAGAAAGACTATTGGGAGAATAATCGGTATTCAGTACTCCATACCCGACTATGTTCGTGTTTCTCCTGACTGTAGGAATCTTCTCTCTCGCATCTTTGTTGCTGATCCTGCCAAGAGGATCACCATCCCAGAGATAAAACAGTATCCTTGGTTTCTGAAGAATATGCCTAAAGAGATCATCGAAGCTGAAAGAAAAGGATTCGAGGAAACAACCAAAGACCAACCAAACCAGAAGGTGGAGGAAATCATGAGGATAATTCAAGCGGCAAGGATACCAGGACAAGGATCCAAAGCTGGAGAAGGTGGACAAGCTGGCACTGGATCATTAGATATTGAGGATGATGAGGAAATTGATGTTAGTGGTGACTATGAACAAGTGTGA	1266	0.3886	MVNLNNEVKRLREEVNVIKRCLKALKEEVVDEVDPIDTEMNLSTNQINPNFVGHEGNQRNFGVRANANLGDEGERKKEVAFWRVDMEERYEPLKELGAGNFGVARLAKDKKTGELVAVKYIERGKKIDENVQREIINHRSLRHPNIIRFKEVLLTPTHLAIVLEYASGGELFERICTAGRFSEDEARYFFQQLISGVSYCHSMEICHRDLKLENTLLDGNPSPRLKICDFGYSKSALLHSQPKSTVGTPAYIAPEVLSRKEYDGKISDVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTIGRIIGIQYSIPDYVRVSPDCRNLLSRIFVADPAKRITIPEIKQYPWFLKNMPKEIIEAERKGFEETTKDQPNQKVEEIMRIIQAARIPGQGSKAGEGGQAGTGSLDIEDDEEIDVSGDYEQV	421

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gma17g01364	421	MobiDBLite	consensus disorder prediction	385	421	-	-
Gma17g01364	421	SUPERFAMILY	Protein kinase-like (PK-like)	88	353	IPR011009	-
Gma17g01364	421	SMART	serkin_6	90	346	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Gma17g01364	421	MobiDBLite	consensus disorder prediction	404	421	-	-
Gma17g01364	421	PANTHER	SERINE/THREONINE KINASE	88	414	-	-
Gma17g01364	421	Pfam	Protein kinase domain	90	346	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Gma17g01364	421	ProSitePatterns	Protein kinases ATP-binding region signature.	96	119	IPR017441	GO:0005524
Gma17g01364	421	Coils	Coil	1	28	-	-
Gma17g01364	421	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	205	217	IPR008271	GO:0004672\|GO:0006468
Gma17g01364	421	Gene3D	Phosphorylase Kinase; domain 1	73	165	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma17g01364	Gma-Chr17	12537935	12545869	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma17g01364	89	350	CBL-interacting serine-threonine protein kinases	AT5G25110	44.689	1.03e-69	226

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_OST1L	Gma17g01364		Pkinase	1.8e-70	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma17g01364	K14498		-	gmx:100782714	677.167

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Gma17g01364	17	12537935	12545869	Gma05g00624	05	6713410	6717680	GST
Gma01g02065	01	56043329	56047137	Gma17g01364	17	12537935	12545869	PCT
Gma11g00350	11	2804109	2807829	Gma17g01364	17	12537935	12545869	PCT
Gma17g01364	17	12537935	12545869	Gma01g02065	01	56043329	56047137	PCT
Gma17g01364	17	12537935	12545869	Gma11g00350	11	2804109	2807829	PCT

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