Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01354 ATGGAGGTTGCTACAGCAGCTTCTAGCTTCGCACTCAACAAGCCCATGCTGGCATTGCCCTCTTCATCTCGAACTGTAACCCCAATCAGATGCATGAACACCTCCACCTCCCCCGTCAGGACCTCTCTCTCTACCAGCTTCGTCGCTCCTTACGCCGGAATCTGCAGCGCGTCTAGCCCTTTCTCCGGCCACAAGCTCCGTCCCTCCTCCCTCAATCCGGCGTCGTTTCTTGGCTCCAACGCTAAACGAGGCGTCGTTACCATGGTTATTCCTTTTCAACGAGGAAGTGCATGGGAGCAACCTCCACCGGACTTAGCTTCTTACTTATACAAAAATCGAATTGTTTATTTGGGCATGTCTCTTGTTCCATCTGTTACTGAGTTGATACTAGCTGAATTTCTTTACCTTCAATATGAAGATGATGATAAGCCTATTTACCTATACATAAACTCCACTGGGACAACTAAGGGAGGTGAGAAGTTGGGTTATGAGACTGAGGCCTTTGCAATTTATGACGTGATGAGGTATGTCAAGCCTCCTATTTTTACTCTTTGTGTTGGTAATGCTTGGGGAGAAGCAGCGTTGCTTTTGGCTGCTGGTGCAAAGGGAAACCGTTCTGCTTTGCCATCATCAACAATAATGATAAGACAGCCAATTGCAAGGTTTCAAGGTCAAGCAACAGATGTTAACCTTGCAAGAAGAGAAGTCAATAATGTGAAGACAGAATTGGTTAAATTGTATGCAAAGCATATGGAAAAAACACCTGAGCAGATTGAAGCTGATATCCAGCGTCCAAAGTATTTTAGCCCTAGTGAAGCTGTTGAGTATGGCATCATAGATAAGGTTATATACAATGATAGGGTTGGAATTAAAATGCCCTTTTCTTGGAGTTCAGAAGTAGATCAATTGAAATGGAAGAAGATCAAGATCAGCAGTCAAATTGTACAACCGCGCCAAGCAAGTAGCGGACATTGGAGTCTCATTGTTAATATCgactcttttactgactccagagcaacatattatggtagccctgattgctatgggaatccaaccggagcttgtggctttggtgaatatggaagagcgatgaattggtatgatggaagagtcgcaggggtgtctgatctatggaggaatggagctggctgtggaacatgttatcaggtaaggtgcctagtaccagaattatgtgatacgaatggagcatacctggtggcaacagaccaaggttatggagacagaacagactttgtcatgagcccacgcgccttcttgaaattgggacgtgatgaatattcatctgaagagcttaagaaatacggcacagtggatattgaatacaaaagggttccatgcacatacaccggcaatgtcttgttccacatcaaggaaactagcaccaaccctggttactttgctttggtcattctcaatgtaaatggaatacacgacgtcactgctgttgaattgtatcagagagggcagaaacgttgggagccactacgcagggtgtatggggcagtgtttgactatgctaacccacccagtggtgcaattctcttgagCGCCGGCTATTGGAGCAACTGGTATCCTCAGCTCGAAACCACCATGATTAAATGA 1623 0.2884 MEVATAASSFALNKPMLALPSSSRTVTPIRCMNTSTSPVRTSLSTSFVAPYAGICSASSPFSGHKLRPSSLNPASFLGSNAKRGVVTMVIPFQRGSAWEQPPPDLASYLYKNRIVYLGMSLVPSVTELILAEFLYLQYEDDDKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYVKPPIFTLCVGNAWGEAALLLAAGAKGNRSALPSSTIMIRQPIARFQGQATDVNLARREVNNVKTELVKLYAKHMEKTPEQIEADIQRPKYFSPSEAVEYGIIDKVIYNDRVGIKMPFSWSSEVDQLKWKKIKISSQIVQPRQASSGHWSLIVNIDSFTDSRATYYGSPDCYGNPTGACGFGEYGRAMNWYDGRVAGVSDLWRNGAGCGTCYQVRCLVPELCDTNGAYLVATDQGYGDRTDFVMSPRAFLKLGRDEYSSEELKKYGTVDIEYKRVPCTYTGNVLFHIKETSTNPGYFALVILNVNGIHDVTAVELYQRGQKRWEPLRRVYGAVFDYANPPSGAILLSAGYWSNWYPQLETTMIK 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01354 540 Gene3D - 320 453 IPR036908 -
Gma17g01354 540 Pfam Lytic transglycolase 371 448 IPR009009 -
Gma17g01354 540 Gene3D - 454 526 IPR036749 -
Gma17g01354 540 SUPERFAMILY Barwin-like endoglucanases 326 458 IPR036908 -
Gma17g01354 540 PRINTS Clp protease catalytic subunit P signature 104 119 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gma17g01354 540 PRINTS Clp protease catalytic subunit P signature 261 280 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gma17g01354 540 PRINTS Clp protease catalytic subunit P signature 183 200 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gma17g01354 540 PRINTS Clp protease catalytic subunit P signature 144 164 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gma17g01354 540 PRINTS Clp protease catalytic subunit P signature 204 223 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gma17g01354 540 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 13 288 - -
Gma17g01354 540 SUPERFAMILY PHL pollen allergen 458 518 IPR036749 -
Gma17g01354 540 CDD S14_ClpP_2 104 282 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gma17g01354 540 Pfam Expansin C-terminal domain 460 519 IPR007117 -
Gma17g01354 540 Gene3D - 78 290 - -
Gma17g01354 540 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 13 288 IPR023562 -
Gma17g01354 540 Pfam Clp protease 104 284 IPR023562 -
Gma17g01354 540 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 471 523 IPR007117 -
Gma17g01354 540 SUPERFAMILY ClpP/crotonase 99 286 IPR029045 -
Gma17g01354 540 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 352 458 IPR007112 -
Gma17g01354 540 Coils Coil 229 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01354 Gma-Chr17 12344359 12401851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01354 327 522 Expansin Gene Family AT4G17030 50.505 5.01e-66 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01354 K01358 - gmx:100780029 555.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01354 17 12344359 12401851 Gma05g00614 05 6440908 6478847 GST