Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01353 ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTTTGGCGTAATGGGCCACCTGAGAAGCCAGTACTATGCAATGCATGTGGATCTCGATGGAGGACAAAGGGAACACTTGCAAATTATACCCCTTTGCACGCCCGGGCAGAAAATATTGATTATGAGGATCAAAAGGTTTCCAGGGTAAAGAGCATATCATTAAATAAGAACACAGAAGTGAAATTGGTCAAACGAAAGCAAAACTATGGTAATGCTGCATCTGGAGGGTTTGTTCCTGATTATAGTCAAGGATACCGAAAAGTTGTGGATGAAGATACAAGCAATAGATCAAGCTCAGGGTCAGCTGTCTCTAACTCAGAGAGCTGTGCTCAATTTGGTGGCCCAGATGCTAGTGATTTGACAGGTCCTGCTCAGTCAGTGGTCTGGGATGCCATGGTGCCTTCAAAAAAGAGGACATGTGCAGGTCGTCCAAAGCCTTCATCTGTTGAGAAGCTCACGAGAGACCTGTGCACTATTCTTCATGAACAGCAGTCTTATTTTTCTGCATCTTCTGAAGAGGATCTTCTTTTCGAAAGTGACACACCAATGGTTTCTGTTGAGATAGGACATGGAAGCATTCTCATCAGGCATCCTAGCTCTATAGCTCGTGATGAAGAGTCTGAGGCTAGCTCTCTCTCAGTTGATAATAAACAATGCCTAATGAATGAAGCATATTCATTTTCTAGTACCATTCCTATATATAGTGATCGCAGTAGCATGAACTTCTCATCTCACGGAGTTGAAAAGATCAAAAACTCAGCTGGCCAAATCATGCAACAAGAGAAGCTTGAAAGGCATGTTTTCCCACACCAGGACAAGTCTCAGCTTGAAAAACTACAAGTTCATGGAAATCATGATTCACCATTGTGCTCAATAGATTTAAATGATGTAGTCAACTACGAGGAGTTTATGAGAAACTTGACAAATGAACAGCAGCAGCAATTACTGAAGTATCTCCCAGTGGTTGATACTGCTAAATTTCCTGATAGCCTTAGAAACATGTTCAATAGCTTCCAATTCAAGGAGAACTTAATCTATTTTCAGCAACTTCTCGGGGAAGGAGTCTTTAACATCTCTTTGTTGGGGGCAAAACCTGAAGAATGGAAGACATTAGAAAGGCTTGCATTATCTAATCTGTCAAAGTCGAAATGGGTAGAACACTATAATTTTCTTAAGAAATGTGAAAACAAATCTGGAAAATCTATTGGTTTGGGTTCTACTGCTATGGAATCAAGTAATGTTACAACTGGCAAAAGAATGCGTGAGCATGACAGCCGAAATCAAAATATTCCAGAATTGAAGACAACGATGAGGAGCCCCAAAAGGGTGATCATAAAGCCTCCTAGCTGTGAGGTCAAAGAAGTTGTAGAAGAAGGCTCTAGCTTCAGTCCAAAAAGCTTATTTGCTTTACCCCATGGTGTTGGTGGCTTGCACATGCTGGATTCTTTCAACTTTGTTGGTGAGAGTTCTGAGGATCTGCTTTTAGAGGTGCCTTCTAACAGTTCTTTTCCACAGGCTGAGCTCCTGCACCCATCTTTAAGCTATGGTGCTCGTCAGGTCAGCACCACTAGTAGCTCAGTACACTCACCTGTTACTCATCCTTAA 1653 0.4217 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAENIDYEDQKVSRVKSISLNKNTEVKLVKRKQNYGNAASGGFVPDYSQGYRKVVDEDTSNRSSSGSAVSNSESCAQFGGPDASDLTGPAQSVVWDAMVPSKKRTCAGRPKPSSVEKLTRDLCTILHEQQSYFSASSEEDLLFESDTPMVSVEIGHGSILIRHPSSIARDEESEASSLSVDNKQCLMNEAYSFSSTIPIYSDRSSMNFSSHGVEKIKNSAGQIMQQEKLERHVFPHQDKSQLEKLQVHGNHDSPLCSIDLNDVVNYEEFMRNLTNEQQQQLLKYLPVVDTAKFPDSLRNMFNSFQFKENLIYFQQLLGEGVFNISLLGAKPEEWKTLERLALSNLSKSKWVEHYNFLKKCENKSGKSIGLGSTAMESSNVTTGKRMREHDSRNQNIPELKTTMRSPKRVIIKPPSCEVKEVVEEGSSFSPKSLFALPHGVGGLHMLDSFNFVGESSEDLLLEVPSNSSFPQAELLHPSLSYGARQVSTTSSSVHSPVTHP 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01353 550 CDD ZnF_GATA 6 54 IPR000679 GO:0006355|GO:0043565
Gma17g01353 550 MobiDBLite consensus disorder prediction 421 441 - -
Gma17g01353 550 Pfam Asx homology domain 293 373 IPR028020 -
Gma17g01353 550 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Gma17g01353 550 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Gma17g01353 550 MobiDBLite consensus disorder prediction 110 128 - -
Gma17g01353 550 PANTHER OSJNBB0038F03.10 PROTEIN 1 550 IPR044589 -
Gma17g01353 550 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 46 - -
Gma17g01353 550 MobiDBLite consensus disorder prediction 106 134 - -
Gma17g01353 550 PANTHER GATA TRANSCRIPTION FACTOR-LIKE PROTEIN 1 550 - -
Gma17g01353 550 Gene3D - 289 397 IPR038108 -
Gma17g01353 550 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Gma17g01353 550 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 301 413 IPR044867 -
Gma17g01353 550 Gene3D - 3 83 IPR013088 GO:0006355|GO:0008270
Gma17g01353 550 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01353 Gma-Chr17 12307282 12312369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01353 1 526 C2C2-Gata Transcription Factor Family AT4G17570 52.311 6.23e-154 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gma17g01353 ASXH 1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01353 - - gmx:100775750 1048.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01353 17 12307282 12312369 Gma05g00612 05 6405603 6411229 GST