Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01334 ATGATGGTTCAAAAGGAAGATTTGGGTTTGAGTTTAAGCCTCAACTTCCCTCATCACAATACCCCAAATCCTCAACATCCGAGTCTCATGTCATCCTCTACTCATTCCTCTTCTCCTTCTGGTTGCAACCCTCAAAAACCCTCTTGGAACGAGGCTTTCACTTCTTCGGATCGAAACTCCGACACATGCAGAGGCGAAACGCGATCGTTCCTGCGCGGAATCGACGTGAACCGGTTACCTTCCGCCGTGGACACCGAGGAGGAAACGGGAGTTTCGTCTCCGAACAGCACCGTCTCTAGCGTGAGTGGAAAACGTAGCGAGAGAGAAGAACCGAACGGCGAAGAACACGACATGGACAGAGCCTGTTCCCGCGGAATCAGCGACGAGGAAGACGCTGAAACCGCAAGGAAAAAACTTAGACTCTCCAAAGACCAATCCGCTATACTCGAAGAAAGCTTCAAAGAACACAACACCCTCAACCCCAAGCAAAAATTGGCACTGGCGAAACAGCTAGGACTTCGACCTAGACAAGTGGAGGTGTGGTTCCAGAACAGAAGAGCAAGGACTAAGCTGAAGCAAACCGAGGTGGACTGCGAAGTATTGAAAAGGTGCTGCGAGAATCTGACGGAGGAAAATAGAAGGTTGCAGAAGGAGGTTCAGGAGCTTAGAGCACTGAAACTTTCCCCACAGTTTTACATGCAAATGACCCCACCCACGACGCTCACCATGTGCCCCTCTTGCGAGCGTGTGGCTGTTCCGTCCTCCGCCGTCGATGCTGCCACGCGTCATCATcccatggcccaggcccaggcccaggcccagATTCGGCACAGGCCCATTGGCCCGTGGGCTTCCGCCTCTCCCATTACGCACCGGCCGTTTGATGTCTTCCACCACTGA 900 0.5067 MMVQKEDLGLSLSLNFPHHNTPNPQHPSLMSSSTHSSSPSGCNPQKPSWNEAFTSSDRNSDTCRGETRSFLRGIDVNRLPSAVDTEEETGVSSPNSTVSSVSGKRSEREEPNGEEHDMDRACSRGISDEEDAETARKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSSAVDAATRHHPMAQAQAQAQIRHRPIGPWASASPITHRPFDVFHH 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01334 299 MobiDBLite consensus disorder prediction 103 138 - -
Gma17g01334 299 ProSiteProfiles 'Homeobox' domain profile. 132 192 IPR001356 GO:0003677
Gma17g01334 299 ProSitePatterns 'Homeobox' domain signature. 167 190 IPR017970 GO:0000981|GO:0006355
Gma17g01334 299 Pfam HD-ZIP protein N terminus 2 109 IPR006712 GO:0005634
Gma17g01334 299 MobiDBLite consensus disorder prediction 1 65 - -
Gma17g01334 299 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 4 291 - -
Gma17g01334 299 MobiDBLite consensus disorder prediction 86 102 - -
Gma17g01334 299 SUPERFAMILY Homeodomain-like 125 193 IPR009057 -
Gma17g01334 299 Gene3D - 140 190 - -
Gma17g01334 299 PANTHER - 4 291 - -
Gma17g01334 299 Pfam Homeobox associated leucine zipper 192 226 IPR003106 GO:0006355|GO:0043565
Gma17g01334 299 Coils Coil 191 228 - -
Gma17g01334 299 MobiDBLite consensus disorder prediction 81 138 - -
Gma17g01334 299 SMART halz 192 235 IPR003106 GO:0006355|GO:0043565
Gma17g01334 299 CDD homeodomain 136 193 IPR001356 GO:0003677
Gma17g01334 299 Pfam Homeodomain 136 190 IPR001356 GO:0003677
Gma17g01334 299 MobiDBLite consensus disorder prediction 14 60 - -
Gma17g01334 299 PRINTS Lambda-repressor HTH signature 163 172 IPR000047 GO:0003677
Gma17g01334 299 PRINTS Lambda-repressor HTH signature 172 188 IPR000047 GO:0003677
Gma17g01334 299 SMART HOX_1 134 196 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01334 Gma-Chr17 12059794 12061878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01334 1 291 Homeobox Transcription Factor Family AT4G16780 65.068 2.75e-111 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma17g01334 HD-ZIP_N 8.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01334 K09338 - gmx:100813367 572.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01334 17 12059794 12061878 Gma05g00590 05 5985468 5987087 GST
Gma11g00323 11 2612936 2614780 Gma17g01334 17 12059794 12061878 PCT
Gma17g01334 17 12059794 12061878 Gma11g00323 11 2612936 2614780 PCT