Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01324 ATGGCACCAAGGGTTAATGATGGAACAATTACAAGCAAGAGAGCAATGAACAGAGGAGCATGGACCCCAGAGGAAGACAGAAAGCTAGCCCAGTGCATTGAAATTCATGGTGCAAAGAGGTGGAAGACTGTTGCAATCAAATCAGGTTTAAATAGGTGTGGGAAGAGTTGCAGGCTGAGATGGTTGAACTATCTGAGACCGAATATCAAGAGGGGAAACATATCAGATGAAGAAGAGGATTTGATTCTTAGGCTTCACAGACTTTTGGGAAACAGGTGGTCTTTGATAGCTGGGAGACTTCCAGGACGAACAGACAATGAAATTAAGAATTACTGGAATTCTCATTTGTGCAAAAAAGTGAATCAGAAAGTGGAGAAGCCAGAAAGTTACACGAGACACGAAATTATTGGCCAGAATGATGCTGGGGACAACCGTGCAATGTCAGAGAACGAGGTTGAAATTAATGAAAGTAGTAACTTAGATGTTAGTAGTTTTGACGTGAACGAATTTTTCAACTTCTCTGAAGAATCCTTTGGGTTTGATTGGCTGAACAAGTACTTGGAACTTGACCAGATTCCTCAGAGCACTGAATGA 594 0.4158 MAPRVNDGTITSKRAMNRGAWTPEEDRKLAQCIEIHGAKRWKTVAIKSGLNRCGKSCRLRWLNYLRPNIKRGNISDEEEDLILRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVNQKVEKPESYTRHEIIGQNDAGDNRAMSENEVEINESSNLDVSSFDVNEFFNFSEESFGFDWLNKYLELDQIPQSTE 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01324 197 SUPERFAMILY Homeodomain-like 16 112 IPR009057 -
Gma17g01324 197 CDD SANT 20 65 IPR001005 -
Gma17g01324 197 SMART sant 70 118 IPR001005 -
Gma17g01324 197 SMART sant 17 67 IPR001005 -
Gma17g01324 197 Pfam Myb-like DNA-binding domain 71 116 IPR001005 -
Gma17g01324 197 Pfam Myb-like DNA-binding domain 18 65 IPR001005 -
Gma17g01324 197 Gene3D - 10 71 - -
Gma17g01324 197 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 69 IPR017930 -
Gma17g01324 197 PANTHER TRANSCRIPTION FACTOR MYB114-LIKE 4 197 - -
Gma17g01324 197 Gene3D - 74 139 - -
Gma17g01324 197 CDD SANT 75 116 IPR001005 -
Gma17g01324 197 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Gma17g01324 197 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 120 IPR017930 -
Gma17g01324 197 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 4 197 - -
Gma17g01324 197 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01324 Gma-Chr17 11901682 11903697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01324 12 130 MYB Transcription Factor Family AT3G13540 63.025 1.46e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma17g01324 Myb_DNA-binding 3.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01324 K09422 - gmx:100811754 387.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01324 17 11901682 11903697 Gma05g00583 05 5819261 5821424 GST
Gma11g00318 11 2560766 2561824 Gma17g01324 17 11901682 11903697 PCT
Gma17g01324 17 11901682 11903697 Gma11g00318 11 2560766 2561824 PCT