Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01318 ATGTTGGACCCGGTTCTAACGCACTTAGGTCATGCAAATTTAACGGACGGCTCAGATCTATTCATCTATAGGGTTAAGCAAGGGACGGCGTCTATAAAACTTAGAGCAACACTTCATCGAAACCCTAGTTCTTCGCTACTGCGACTGCGCTTCAGCACAATGGGTGCCTACAAGTATGTTTCGGAGCTATGGCGCAAGAAGCAGTCTGATGTTATGAGATTCTTGCAGCGGGTGAGGTGCTGGGAGTATCGCCAGCAACCTTCTATTGTCCGTTTGACAAGGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCAGTTCCAAAGGGTATTGTTTATGGTAAGCCCACCAACCAAGGTGTTACTCAACTGAAATTTCAACGCAGCAAGAGGTCTGTTGCCGAGGAGAGAGCCGGAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGGACTCCACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACACTGCTGTAAGAAATGATCCAAGAATCAACTGGCTCTGCAATCCAGTCCATAAACACAGGGAACTGCGTGGCCTCACTTCTGCTGGGAAAAGCAATAGGGGTTTACGTGGCAGAGGACATCTCTACCACAAAAATCGTCCATCACGCAGGGCAACCTGGAAGAGAAACAATACCCTCTCCCTTCGTCGCTACCGTTGA 774 0.4922 MLDPVLTHLGHANLTDGSDLFIYRVKQGTASIKLRATLHRNPSSSLLRLRFSTMGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLTRSTRPDKARRLGFKAKQGYVIYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEVILVDVAHTAVRNDPRINWLCNPVHKHRELRGLTSAGKSNRGLRGRGHLYHKNRPSRRATWKRNNTLSLRRYR 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01318 257 SMART Ribosomal_L15e_2 55 246 IPR000439 GO:0003735|GO:0005840|GO:0006412
Gma17g01318 257 MobiDBLite consensus disorder prediction 228 242 - -
Gma17g01318 257 ProSitePatterns Ribosomal protein L15e signature. 99 122 IPR020925 GO:0003735|GO:0005840|GO:0006412
Gma17g01318 257 Gene3D Ribosomal protein l15e 54 257 IPR024794 GO:0003735|GO:0005840
Gma17g01318 257 PANTHER RIBOSOMAL PROTEIN L15 36 257 IPR000439 GO:0003735|GO:0005840|GO:0006412
Gma17g01318 257 PANTHER RIBOSOMAL PROTEIN L15 36 257 - -
Gma17g01318 257 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 54 248 IPR012678 GO:0003735|GO:0005840|GO:0006412
Gma17g01318 257 Pfam Ribosomal L15 55 243 IPR000439 GO:0003735|GO:0005840|GO:0006412
Gma17g01318 257 MobiDBLite consensus disorder prediction 217 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01318 Gma-Chr17 11860212 11862783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01318 54 257 Cytoplasmic Ribosomal Protein Gene Family AT4G16720 90.686 1.25e-126 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01318 K02877 - gmx:100810310 409.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01318 17 11860212 11862783 Gma17g01318 17 11860212 11862783 ECH
Gma17g01318 17 11860212 11862783 Gma05g00579 05 5765389 5768021 GST
Gma11g00317 11 2553842 2556678 Gma17g01318 17 11860212 11862783 PCT
Gma17g01318 17 11860212 11862783 Gma11g00317 11 2553842 2556678 PCT