Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01311 ATGGATAGACACAAATGCAAGCTTTGTTCAAGGTCTTTCAGCAATGGCAGAGCCCTTGGTGGGCACATGAAGGCTCACCTTGCTTCTCTCCCTCTCCCTCTCCCTCCAAAGCTTCACTCTTGTTTCTCTTCCTCTGACTCAGAACAAGAACAATCTTTAAGGGAGAATCCTAAGAAAACCTTGAGGATTCTGGATCCTGAAGACAGAGAGAGCGAGACAGAGTCTAATAAGAACCCGACTCGTCAACGATCCAAGCGCAACTGGAAATCTACCATGCCCAAGCTCAGCCTCGGACACCCCGAAGCCGAACCTCTCAGCTCCGTCTCCGACACCTCCCCCGAAGAAGACCTCGCCATGTGCCTCATGATGCTCTCCCGCGACACGTGGCAGGAACACAAACTCGCCAATGCAGGTCCACCCAAGACTCGCTGCAGCAGCGGATCAGAGATCAAGCTCAAGAACAAAGTCCGCTCCAAGCACCTCTGCCACGCTTGTCACAAATCCTTTCGATCCTCTCGCGCTCTTGGGAGCCACAGAACCCTGTGCTCTCCCCGTCTGGAAGCCCAAAATAACAGCATCATTAGTAATAACAACATTAAGGTTTTTGAATGCCCCTTCTGTTACAAGCTGTTTGGTTCTGGCCAAGCGCTCGGTGGACACAAGAGATCTCACCTAATTCCTTCTTCCTCTTCAACCGTTAATCATTCTGTCAAGTTGAAACAGAGCTTCATAGATCTCAACTTGCCTGCTCCGGCCGAAGACGACGATCTTAGCGTTGTTTCTGATGCCTAA 792 0.5063 MDRHKCKLCSRSFSNGRALGGHMKAHLASLPLPLPPKLHSCFSSSDSEQEQSLRENPKKTLRILDPEDRESETESNKNPTRQRSKRNWKSTMPKLSLGHPEAEPLSSVSDTSPEEDLAMCLMMLSRDTWQEHKLANAGPPKTRCSSGSEIKLKNKVRSKHLCHACHKSFRSSRALGSHRTLCSPRLEAQNNSIISNNNIKVFECPFCYKLFGSGQALGGHKRSHLIPSSSSTVNHSVKLKQSFIDLNLPAPAEDDDLSVVSDA 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01311 263 ProSitePatterns Zinc finger C2H2 type domain signature. 204 224 IPR013087 -
Gma17g01311 263 SUPERFAMILY beta-beta-alpha zinc fingers 3 29 IPR036236 -
Gma17g01311 263 MobiDBLite consensus disorder prediction 51 81 - -
Gma17g01311 263 SUPERFAMILY beta-beta-alpha zinc fingers 160 224 IPR036236 -
Gma17g01311 263 MobiDBLite consensus disorder prediction 40 111 - -
Gma17g01311 263 Gene3D Classic Zinc Finger 151 224 - -
Gma17g01311 263 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Gma17g01311 263 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Gma17g01311 263 SMART c2h2final6 160 180 IPR013087 -
Gma17g01311 263 SMART c2h2final6 4 26 IPR013087 -
Gma17g01311 263 SMART c2h2final6 202 224 IPR013087 -
Gma17g01311 263 Pfam C2H2-type zinc finger 201 225 - -
Gma17g01311 263 Pfam C2H2-type zinc finger 3 28 - -
Gma17g01311 263 Pfam C2H2-type zinc finger 160 179 - -
Gma17g01311 263 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 263 IPR044303 GO:0006355
Gma17g01311 263 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 263 - -
Gma17g01311 263 ProSiteProfiles Zinc finger C2H2 type domain profile. 202 224 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01311 Gma-Chr17 11785559 11786567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01311 1 260 C2H2 Transcription Factor Family AT3G60580 36.149 6.53e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma17g01311 zf-C2H2_6 1.3e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01311 - - gmx:100807121 520.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01311 17 11785559 11786567 Gma17g01311 17 11785559 11786567 ECH
Gma17g01311 17 11785559 11786567 Gma05g00565 05 5600638 5601435 ECH
Gma17g01311 17 11785559 11786567 Gma05g00565 05 5600638 5601435 GST
Gma11g00303 11 2448415 2449281 Gma17g01311 17 11785559 11786567 PCT
Gma17g01311 17 11785559 11786567 Gma11g00303 11 2448415 2449281 PCT