Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01306 ATGGCTCCTCTCTTCATCTCAATGCAAATGCTTCTTCTGGTTTTCACTTGCATATTATTGCATGTCACATGCACAACTTACCACGACAGCACCCCCAAAACAGTGCCTTCTACAAACTCCTCTAAGTGGGTGGGGCCCATCGGACACCGAGTAATCACCGTTGACGTTAACGGCGGAGCCCATTTCCGCTCAGTCAAAGCCGCCGTCAATGCTGTCCCGGAGAACAACAGAATGAACGTCCTTATTCAAATAAGCGCCGGATATTACATAGAGAAGGTGGTAGTGCCCGTGACGAAGCCGTACATTACGTTTCAAGGTGCGGGAAGGGATGTGACGGTGATAGAATGGCATGATAGGGCTAGTGACCCTGGTCCCAACGGCCAACAACTGCGTACTTACAGAACTGCTTCTGTTACTGTTTTTGCCAATTATTTCTCTGCCAGGAATATCAGCTTCAAGAACACAGCACCGGCACCCATGCCGGGAATGGAGGGGTGGCAAGCGGCGGCGTTTCGCATATCCGGAGACAAAGCCTATTTCTCCGGCTGTGGATTCTACGGTGCACAAGACACTCTTTGCGACGACGCTGGCCGCCATTATTTCAAAGAATGTTACATCGAGGGCTCCATAGATTTCATCTTTGGCAATGGCAGGTCCATGTACAAGGATTGCAGGCTACACTCAATTGCGACGAGGTTTGGGTCAATAGCAGCCCAAGACAGGCAATTCCCATACGAGAAGACGGGCTTCTCATTCGTACGGTGCAAGGTGACAGGAACAGGCCCAATTTACGTGGGCCGTGCAATGGGCCAGTACTCCAGGATTGTCTATGCCTACACTTACTTTGACGGCATAGTTGCACATGGTGGTTGGGATGATATTGATTGGAACACTTCCAACAATAACAAGACTGTGTTCTTTGGAGTGTACAAATGCTGGGGACCAGGAGCAGCGGCTATACGTGGAGTCCCATTGGCCCAAGAGCTAGATTTCGAATCTGCACATCCATTCCTTGTCAAGAGTTTTGTCAATGgAAGACACTGGATTGCACCCTCTGATGCTTAG 1065 0.4977 MAPLFISMQMLLLVFTCILLHVTCTTYHDSTPKTVPSTNSSKWVGPIGHRVITVDVNGGAHFRSVKAAVNAVPENNRMNVLIQISAGYYIEKVVVPVTKPYITFQGAGRDVTVIEWHDRASDPGPNGQQLRTYRTASVTVFANYFSARNISFKNTAPAPMPGMEGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCRLHSIATRFGSIAAQDRQFPYEKTGFSFVRCKVTGTGPIYVGRAMGQYSRIVYAYTYFDGIVAHGGWDDIDWNTSNNNKTVFFGVYKCWGPGAAAIRGVPLAQELDFESAHPFLVKSFVNGRHWIAPSDA 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01306 354 PANTHER PECTINESTERASE 68-RELATED 16 353 - -
Gma17g01306 354 Gene3D - 48 353 IPR012334 -
Gma17g01306 354 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 16 353 - -
Gma17g01306 354 Pfam Pectinesterase 52 345 IPR000070 GO:0030599|GO:0042545
Gma17g01306 354 ProSitePatterns Pectinesterase signature 2. 206 215 IPR033131 -
Gma17g01306 354 SUPERFAMILY Pectin lyase-like 49 351 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01306 Gma-Chr17 11747189 11750283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01306 4 354 Carbohydrate Esterase AT5G47500 72.365 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01306 - - gmx:100796327 743.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01306 17 11747189 11750283 Gma17g01306 17 11747189 11750283 ECH
Gma01g02110 01 56445484 56449163 Gma17g01306 17 11747189 11750283 PCT
Gma11g00300 11 2415042 2418011 Gma17g01306 17 11747189 11750283 PCT