Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01288 ATGCATTCAAGTTTGCAAGCTTATTCTGAACAAGATTCACCACCCTCACCTGGGAAGGGCTCAAGAAGCAATTCAAGGAAAAGTACTGGAAATGTGGATGATGTAAGGTCCAATGGTTGGTTAGATGCCATGAAGGCTTCTTCGCCTCCTAGGAAGAAGCTAATTAAAGGGTCCAGTAATCAGGTTGCTTCAATTGACGATGACTTTGAAGACTATTGTTCATGGATGCTTGAATATCCATCAGCACTAGACTCTTTTGAGGAAATCATTGACCTTGCAATGGATAAGAAGATTGCAATGTTTCTAGATTATGATGGCACACTTTCACCAATAGTAGATGATCCGAATTGTGCCTTTATGTCTGAATCTATGCGTTCAACTGTGAGAAGTGTGGCAAAACATTTCCCCACAGCAATCATCAGTGGAAGAAGCCGTGACAAGGTTTTTGATTTAGTTAAACTAACAGAACTCTACTACGCTGGTAGTCATGGGATGGACATTATTGGCCCTGTTAGTGAGACTTTGTCCAAAAATCACCCAAATTGTGTCAAGTCTAATGACCATCCGGGAAAGGAAACAACTCTCTTTCAACCTGCAAGAGAATTTCTATCTATGATTGATGAGATTTTTAGAATCCTCGTAGAGATTACTAAAGATATACAAGGAGCAAAAGTTGAAAATCACAAGTTTTGTGTTTCTGTGCATTACCGTAATGTAGAAGAGAATAATTGGACAACGATTGGACAACGTGTCCATGATGTCTTGAAAGATTACCCTCTTTTACGTTCAACTCATGGACGAAAGGTTTTAGAAGTTCGTCCTGTGATTGATTGGAATAAAGGAAAAGCTGTTGAATTTTTACTTGAATCTCTAGGGTTAGCTGATAGGAATGATGTACTTCCCATTTACATCGGAGATGACAAAACTGATGAAGATGCATTCAAGATGTTGCGAGAGAGCAATCGAGGTTATGGAATTTTGGTTTCATCAGTTAGGAAAGAAAGCAATGCCTTCTACTCTCTTCGAGACCCCAATGAGGTCATGAAATTTCTTCAACTATTGGTAAATTGGAAGAATCAAGAAAGATAG 1089 0.3893 MHSSLQAYSEQDSPPSPGKGSRSNSRKSTGNVDDVRSNGWLDAMKASSPPRKKLIKGSSNQVASIDDDFEDYCSWMLEYPSALDSFEEIIDLAMDKKIAMFLDYDGTLSPIVDDPNCAFMSESMRSTVRSVAKHFPTAIISGRSRDKVFDLVKLTELYYAGSHGMDIIGPVSETLSKNHPNCVKSNDHPGKETTLFQPAREFLSMIDEIFRILVEITKDIQGAKVENHKFCVSVHYRNVEENNWTTIGQRVHDVLKDYPLLRSTHGRKVLEVRPVIDWNKGKAVEFLLESLGLADRNDVLPIYIGDDKTDEDAFKMLRESNRGYGILVSSVRKESNAFYSLRDPNEVMKFLQLLVNWKNQER 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01288 362 CDD HAD_TPP 99 349 - -
Gma17g01288 362 MobiDBLite consensus disorder prediction 1 35 - -
Gma17g01288 362 PANTHER TREHALOSE-PHOSPHATE PHOSPHATASE F-RELATED 1 361 - -
Gma17g01288 362 Gene3D - 98 185 IPR023214 -
Gma17g01288 362 Gene3D - 196 362 IPR023214 -
Gma17g01288 362 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 100 319 IPR006379 -
Gma17g01288 362 SUPERFAMILY HAD-like 99 358 IPR036412 -
Gma17g01288 362 Pfam Trehalose-phosphatase 101 344 IPR003337 GO:0003824|GO:0005992
Gma17g01288 362 TIGRFAM T6PP: trehalose-phosphatase 96 355 IPR003337 GO:0003824|GO:0005992
Gma17g01288 362 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 361 IPR044651 GO:0004805|GO:0005992
Gma17g01288 362 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01288 Gma-Chr17 11461359 11463924 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01288 96 354 Trehalose Biosynthesis Gene Families AT1G70290 26.715 3.35e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01288 K01087 - tcc:18606311 520.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01288 17 11461359 11463924 Gma17g01288 17 11461359 11463924 ECH