Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01284 ATGTCATCCTCTTCCAGCACATTATCACTGGACCACCTCCCTCCTTCCGAACAGCTTTGTTATGTTCACTGCAACATTTGTGACACCGTCCTCGCTGTAAGTGTTCCTTGCACAAGCTTGTTCAAGACCGTCACTGTCCGATGCGGCCATTGCACTAACCTCCTCCCAGTGAACATGCGAGGGTTGCTTATGCCATCTCCCACTCAATTTCATTTGGGTCACTCTTTCTTCTCCCCATCTCATAACCTTCTGGAGGAGATACCAAACCCCACTCCAAATTTTCTTATGAACCAAACAAATTTCAGTGCGTCACATGAGTTCTCTATGCCTGCTAGGACTGCAGCTGATGAGCTTCCACGGCCACCGATCACAAACAGACCTCCTGAGAAGAGACAGAGAGTCCCCTCAGCGTACAATCGCTTTATCAAGGACGAGATCCAACGCATCAAGTCTGTCAATCCCGATATAACTCACAGGGAAGCCTTCAGTGCAGCTGCAAAGAATTGGGCCCACTTCCCACACATCCACTTTGGTCTCATGCCTGATCAGACTGTGAAGAAGACAAATGTGTGCCAGCAGGATGGAGAAGAGGTTCTCATGAAAGATGGGTTTTATGCTTCGGCTAATGTTGGTGTCTCACCCTACTAA 648 0.4846 MSSSSSTLSLDHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLMPSPTQFHLGHSFFSPSHNLLEEIPNPTPNFLMNQTNFSASHEFSMPARTAADELPRPPITNRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNVCQQDGEEVLMKDGFYASANVGVSPY 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01284 215 SUPERFAMILY HMG-box 124 172 IPR036910 -
Gma17g01284 215 PANTHER PROTEIN YABBY 6-RELATED 1 213 IPR006780 GO:0007275
Gma17g01284 215 Gene3D High mobility group box domain 122 175 IPR036910 -
Gma17g01284 215 Pfam YABBY protein 15 179 IPR006780 GO:0007275
Gma17g01284 215 PANTHER PROTEIN YABBY 4 1 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01284 Gma-Chr17 11377015 11380538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01284 26 213 C2C2-YABBY Transcription Factor Family AT4G00180 59.330 2.83e-63 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Gma17g01284 YABBY 8.5e-71 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01284 K25796 - gmx:100798441 445.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01284 17 11377015 11380538 Gma17g01284 17 11377015 11380538 ECH
Gma17g01284 17 11377015 11380538 Gma05g00534 05 5130752 5133513 GST