Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01283 ATGAACACGTTTTCACATGTACCACCAGGCTTTCGATTTCATCCGACCGATGAAGAACTTGTCGGTTACTACCTTAGGAAAAAGGTAGCGTCTAAAAGGATTGATCTAGATGTCATCAAAGATGTCGATCTCTATAAAATTGAACCATGGGATCTCCAAGAATTATGCAAAATAGGAACCGATGAACAAAGTGACTGGTATTTCTTTAGTCATAAAGATAAGAAATATCCAACTGGAACTCGCACCAATAGAGCTACAAAAGCAGGATTCTGGAAAGCCACGGGAAGAGACAAGGCAATATACTCTAAGCATTGCCTCATTGGCATGAGAAAGACTCTCGTGTTTTACAAAGGACGAGCCCCAAATGGACAGAAGTCTGATTGGATCATGCATGAGTACAGGCTAGAAACTAATGAAAATGGAACAACTTCTCAGGAAGAAGGCTGGGTTGTGTGTAGAGTGTTCAAGAAGAGAATGACAACAATGCAGAAAGTGGGAGAGTATGATCAATCACCCTGTTGGTACGATGAGCAAGTTTCCTTCATGCAAGATCTTGAATCCCCCAGGCGCAGTATTTCTCTGCCTTATGCATCATACCACCACCACCACCACCCTAGCTGCAAGCCTGAGCTCATGGAATTGCAATACAACAACATTCCCCACGATGCATTCCTCCAACTTCCACAACTTGAAAGCCCCAAAGTTACTCAATCAGCATGCTCAGTTGTCCCTTATGGCTATGAAaacaacaacaacaacaacaacaacaacaaTGGAAGCACCTTGCAGTTCTCATCACTCACTCAGGAAGAACAGTTACAATATTGCAATAACCAACAAAGTCACCATTCTCTCTATGGCAGCAATGATCATGCGGTTGACCAGGTCACAGATTGGCGTGTACTTGACAAATATGTTGCTTCTCAGCTCAGTCACAACAACCAAGATGTCGTTTCCAAGGAAACCAGTTATTCCAATGCACCCATTTTCAATGTGACGGAACAAGTTTCTGTGGTTGCAAATGGATCCAAAAAGGAGCAAGTTTCTCAGGAGTATGCTTCAACGTCTACCTCCAGTTACCAGATTGACCTGTGGAAGTGA 1101 0.4205 MNTFSHVPPGFRFHPTDEELVGYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCKIGTDEQSDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSKHCLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTTSQEEGWVVCRVFKKRMTTMQKVGEYDQSPCWYDEQVSFMQDLESPRRSISLPYASYHHHHHPSCKPELMELQYNNIPHDAFLQLPQLESPKVTQSACSVVPYGYENNNNNNNNNNGSTLQFSSLTQEEQLQYCNNQQSHHSLYGSNDHAVDQVTDWRVLDKYVASQLSHNNQDVVSKETSYSNAPIFNVTEQVSVVANGSKKEQVSQEYASTSTSSYQIDLWK 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01283 366 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 4 355 - -
Gma17g01283 366 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Gma17g01283 366 Gene3D NAC domain 16 161 IPR036093 GO:0003677|GO:0006355
Gma17g01283 366 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 355 - -
Gma17g01283 366 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Gma17g01283 366 SUPERFAMILY NAC domain 5 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01283 Gma-Chr17 11353781 11356902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01283 1 366 NAC Transcription Factor Family AT1G12260 54.639 1.21e-136 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma17g01283 NAM 1.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01283 - - gmx:100797916 739.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01283 17 11353781 11356902 Gma17g01283 17 11353781 11356902 ECH
Gma17g01283 17 11353781 11356902 Gma05g00533 05 5093059 5096337 GST
Gma11g00282 11 2240632 2242381 Gma17g01283 17 11353781 11356902 PCT
Gma17g01283 17 11353781 11356902 Gma11g00282 11 2240632 2242381 PCT