Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01280 ATGGCCGAGGAAGCCAAAGCCAAAGGCAACGCGGCATTCTCCGCCGGCGACTTCGCCGCCGCGGTCCGCCACTTCTCGGACGCCATCGCCCTTTCCCCCTCCAACCACGTTCTCTACTCCAACCGATCCGCCGCCCACGCCTCCCTCCAGAACTACGCGGAGGCCCTAGCCGACGCCCAGAAGACCGTCGACCTCAAGCCCGACTGGCCCAAGGCCTACAGCCGCCTCGGCGCCGCCCACCTCGGCCTCCGCCGCCACCGCGACGCCTTCTCCGCCTACAAAACCGGCCTCCAACTCGACCCCGACAATGCCGCCCTCAAATCCGGCCTTGCCGATGCCCAGGCCGCCGCCTCCCGCCCTCCCCCCACCAGCCCCTTCGCCACCGCCTTCTCCGGCCCCGACATGTGGGCCCGCCTCACCGCCGACCCCACCGCACGTGCCAACCTCCAGGACCCCGAGTTCGTCAAGATCATGCAGGACATCCAGAAGGACCCCAACAAGTTCAACCTGCATTTGAGTGATCAGAGAGTCATGCATGCCATTGGGGTTTTGCTCAATGTCAAAATTCAAACCCCTAACCACGACGAAAACGACCACGATGCCGATGATGACGTGTCCGAGGATGAGGTTGTTTCCCAGCCCGAACCTGAACACGAGCCTGAAGCGGCGGTGGAAGTGGCGGAGGAGGAGGAGGAGGAGGAGAAGGAGACGAGGGATAGGAAAGGGCAGGCTCAGAAGGAGAAGGAAGCTGGCAATGCTGCTTACAAGAAGAAGGATTTTGAAACCGCGATTGGACATTACAGCAAGGCTTTGGAGTTGGATGATGAGGATATTTCCTACCTTACTAATCGTGCTGCAGTTTACTTGGAGATGGGAAAGTTTGAGGACTGCATAAAGGATTGTGAAAAGGCTGTTGAGAGGGGAAAAGAACTAAGATCAGATTACAAGATGATAGCAAGAGCTTTGACAAGGAAAGGTACTGCATTGGCTAAAATGGCTAAATGCTCTAAGGATTTTGAACCTGCCATTGAGATTTTCCAAAAAGCACTTACAGAGAACCGCAACCCAGACACCTTGAAGAAACTGAACGAAGCTGAAAAGGCTAAGAAAGAACTAGAGCAACAAGAATATTTTGATCCAAAATTAGCTGATGAGGCGAGAGAAAAAGGAAATGAATTATTCAAGCAGCAGAAGTATCCTGAGGCTACGAAGCATTATACAGAAGCTATAAAAAGGAACCCAAAAGATGCTAAGGCTTATAGTAACAGAGCTGCATGCTATACAAAACTGGGGGCAATGCCCGAAGGCTTAAAAGATGCAGAGAAATGCATTGAGCTTGATCCAACCTTTTCAAAGGGTTATACTAGGAAAGGTGCAGTGCAGTTTTCCATGAAAGAATATGACAAAGCTTTGGAAACATACAGGGAGGGTTTGAAACATGATCCTAACAATCAGGAATTGCTTGATGGCATAAGAAGATGTGTAGAACAAATTAATAAGGCTAGCCGTGGAGATTTTACACCTGAGGAGTTAAAGGAGAGACAGGCCAAGGCAATGCAAGACCCAGAGATACAAAGCATTCTGCAAGACCCTGTTATGACACAAGTATTGACTGATTTCCAGGAAAATCCCAGAGCTGCAGAGGAACATGTGAAGAATCCAATGGTGATGAACAAGATTCAAAAGCTGATCAGTGCCGGGATTGTCCAGATGAGATGA 1719 0.5119 MAEEAKAKGNAAFSAGDFAAAVRHFSDAIALSPSNHVLYSNRSAAHASLQNYAEALADAQKTVDLKPDWPKAYSRLGAAHLGLRRHRDAFSAYKTGLQLDPDNAALKSGLADAQAAASRPPPTSPFATAFSGPDMWARLTADPTARANLQDPEFVKIMQDIQKDPNKFNLHLSDQRVMHAIGVLLNVKIQTPNHDENDHDADDDVSEDEVVSQPEPEHEPEAAVEVAEEEEEEEKETRDRKGQAQKEKEAGNAAYKKKDFETAIGHYSKALELDDEDISYLTNRAAVYLEMGKFEDCIKDCEKAVERGKELRSDYKMIARALTRKGTALAKMAKCSKDFEPAIEIFQKALTENRNPDTLKKLNEAEKAKKELEQQEYFDPKLADEAREKGNELFKQQKYPEATKHYTEAIKRNPKDAKAYSNRAACYTKLGAMPEGLKDAEKCIELDPTFSKGYTRKGAVQFSMKEYDKALETYREGLKHDPNNQELLDGIRRCVEQINKASRGDFTPEELKERQAKAMQDPEIQSILQDPVMTQVLTDFQENPRAAEEHVKNPMVMNKIQKLISAGIVQMR 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01280 572 Pfam Tetratricopeptide repeat 452 484 IPR001440 GO:0005515
Gma17g01280 572 Pfam Tetratricopeptide repeat 7 68 - -
Gma17g01280 572 Gene3D Tetratricopeptide repeat domain 382 502 IPR011990 GO:0005515
Gma17g01280 572 MobiDBLite consensus disorder prediction 234 253 - -
Gma17g01280 572 ProSiteProfiles TPR repeat profile. 383 416 IPR019734 GO:0005515
Gma17g01280 572 PANTHER TPR REPEAT CONTAINING PROTEIN 1 571 IPR045248 GO:0006457|GO:0030544|GO:0051879
Gma17g01280 572 ProSiteProfiles TPR repeat region circular profile. 451 484 - -
Gma17g01280 572 SUPERFAMILY TPR-like 8 490 IPR011990 GO:0005515
Gma17g01280 572 Gene3D - 503 572 - -
Gma17g01280 572 ProSiteProfiles TPR repeat profile. 244 277 IPR019734 GO:0005515
Gma17g01280 572 PANTHER HSP70-HSP90 ORGANIZING PROTEIN 3 1 571 - -
Gma17g01280 572 SMART CBM 521 560 IPR006636 -
Gma17g01280 572 SMART CBM 142 181 IPR006636 -
Gma17g01280 572 Gene3D - 122 190 - -
Gma17g01280 572 SMART tpr_5 244 277 IPR019734 GO:0005515
Gma17g01280 572 SMART tpr_5 417 450 IPR019734 GO:0005515
Gma17g01280 572 SMART tpr_5 2 35 IPR019734 GO:0005515
Gma17g01280 572 SMART tpr_5 70 103 IPR019734 GO:0005515
Gma17g01280 572 SMART tpr_5 36 69 IPR019734 GO:0005515
Gma17g01280 572 SMART tpr_5 278 311 IPR019734 GO:0005515
Gma17g01280 572 SMART tpr_5 383 416 IPR019734 GO:0005515
Gma17g01280 572 SMART tpr_5 319 356 IPR019734 GO:0005515
Gma17g01280 572 SMART tpr_5 451 484 IPR019734 GO:0005515
Gma17g01280 572 Gene3D Tetratricopeptide repeat domain 241 377 IPR011990 GO:0005515
Gma17g01280 572 Coils Coil 355 375 - -
Gma17g01280 572 ProSiteProfiles TPR repeat profile. 417 450 IPR019734 GO:0005515
Gma17g01280 572 Pfam TPR repeat 390 431 - -
Gma17g01280 572 Pfam TPR repeat 251 292 - -
Gma17g01280 572 Coils Coil 227 247 - -
Gma17g01280 572 MobiDBLite consensus disorder prediction 192 253 - -
Gma17g01280 572 Pfam STI1 domain 133 186 IPR041243 -
Gma17g01280 572 Pfam STI1 domain 513 564 IPR041243 -
Gma17g01280 572 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Gma17g01280 572 Gene3D Tetratricopeptide repeat domain 1 116 IPR011990 GO:0005515
Gma17g01280 572 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Gma17g01280 572 ProSiteProfiles TPR repeat profile. 451 484 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01280 Gma-Chr17 11319027 11322432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01280 1 81 U-box Gene Family AT3G07370 34.568 1.03e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01280 K09553 - gmx:547932 1049.27