Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01272 ATGGGTTCTTCGGAGCGGAAACCCTGCGCCAACAACTGCGGTTTCTTCGGAACTTCCGAGAAGCTAAACCTCTGCTCCAAATGCTACAAGGACCTCTGTCTCGAAGAGGAGCTTGCATCAATGAAGTCTGTGCTCTGCTCAGCAAAGCCACCCTCGCCGGCGGAGCCGTCGCAGGGCACGGAGGGTCCGTCGAAACCGGCGAACCGGTGTGGGACATGCAACAAAAAAGTGGGTTTAACCGGTTTTGTGTGCAAGTGTGGGAGTACCTTCTGTGGGGTGCATCGTTACCCGGAGAAACACAAGTGCACCTATGATTTTAAGGGTGAGGCCCGCGAAGCGATTGCGAAGGCGAATCCTGTTGTTAAGGGTGACAAAATTGATAGGTTTTAG 390 0.5359 MGSSERKPCANNCGFFGTSEKLNLCSKCYKDLCLEEELASMKSVLCSAKPPSPAEPSQGTEGPSKPANRCGTCNKKVGLTGFVCKCGSTFCGVHRYPEKHKCTYDFKGEAREAIAKANPVVKGDKIDRF 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01272 129 ProSiteProfiles Zinc finger A20-type profile. 3 37 IPR002653 GO:0003677|GO:0008270
Gma17g01272 129 Gene3D - 2 54 - -
Gma17g01272 129 Pfam AN1-like Zinc finger 70 106 IPR000058 GO:0008270
Gma17g01272 129 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 9 46 - -
Gma17g01272 129 SMART AN1_Zf_4 70 107 IPR000058 GO:0008270
Gma17g01272 129 Pfam A20-like zinc finger 8 30 IPR002653 GO:0003677|GO:0008270
Gma17g01272 129 ProSiteProfiles Zinc finger AN1-type profile. 64 110 IPR000058 GO:0008270
Gma17g01272 129 PANTHER AN1-TYPE ZINC FINGER PROTEIN 56 129 - -
Gma17g01272 129 PANTHER AN1-TYPE ZINC FINGER PROTEIN 3 44 - -
Gma17g01272 129 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 1 56 129 - -
Gma17g01272 129 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 1 3 44 - -
Gma17g01272 129 SMART A20_3 6 30 IPR002653 GO:0003677|GO:0008270
Gma17g01272 129 SUPERFAMILY AN1-like Zinc finger 55 124 IPR035896 -
Gma17g01272 129 Gene3D - 55 115 IPR035896 -
Gma17g01272 129 MobiDBLite consensus disorder prediction 47 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01272 Gma-Chr17 11257728 11258117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01272 7 129 C2H2 Transcription Factor Family AT3G52800 42.675 4.02e-34 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01272 - - gmx:100787871 280.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01272 17 11257728 11258117 Gma17g01272 17 11257728 11258117 ECH
Gma17g01272 17 11257728 11258117 Gma05g00517 05 4965726 4966097 GST