Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01270 ATGGATCCAATCTCGGCACATGGTCATTCCCTCCCCCCTCCTTTTCACACAAGAGATCTCCATCTGCACCACCAGCAGCAACAACAACAACACCAGTTCCAAAGCTTAAACCAAGCCACCGAGGACGAGAACAGCGGCAGCAGCGGCGCGCAGAAAAGGGAACGCGAAGAAAACAGCAACGGCAACAACGAAGGTGCAGGTGAGGCTGAGATAACAAGAAGGCCTCGAGGAAGACCAGCTGGGTCCAAAAACAAGCCTAAGCCACCCATTATCATCACCCGCGACAGCGCCAACGCCATGAGAACCCACATGATGGAGGTGGCAGACGGCTACGACATCGTGGAAAGCGTGTCTGAGTTCGCCAGGAAACGCCAGAGAGGGATTTGCATCATGAGCGGCACCGGCACCGTCACCAACGTCACCCTCCGGCAACCGGCTTCATCGGGTTCGGTTGTCACTCTTCACGGAAGGTTCGAGATCTTGTCCCTCTCGGGATCGTTCCTTCCACCACCTGCGCCACCGGCCGCGTCTGGTTTGACCATCTATCTGGCCGGTGGTCAGGGACAGGTGGTGGGAGGAAGCGTTGTTGGAACACTGGTTGCTTCAGGGCCCGTGGTGATCATGGCCGCCTCGTTTAGCAACGCTGCTTATGAGAGGCTTCCTTTGGAGGATGAGGACCCTAATTCGCTGCAAATGCAAGGAGGTTCAATTGGGTCACCCGGTGCAAGTGGTGTTGGCCAGTCACAGCTTCTAGGAGGGGATGCTACCGCTCCACTTTTCCATGGTTTGCCTCCTAATCTTCTCAATTCTGTTCAGATGCCATCTGAGCCATTCTGGGCGGCATCTACTCGCCCACCTTTCTGA 864 0.5602 MDPISAHGHSLPPPFHTRDLHLHHQQQQQQHQFQSLNQATEDENSGSSGAQKREREENSNGNNEGAGEAEITRRPRGRPAGSKNKPKPPIIITRDSANAMRTHMMEVADGYDIVESVSEFARKRQRGICIMSGTGTVTNVTLRQPASSGSVVTLHGRFEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGTLVASGPVVIMAASFSNAAYERLPLEDEDPNSLQMQGGSIGSPGASGVGQSQLLGGDATAPLFHGLPPNLLNSVQMPSEPFWAASTRPPF 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01270 287 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 7 287 - -
Gma17g01270 287 MobiDBLite consensus disorder prediction 47 61 - -
Gma17g01270 287 CDD DUF296 101 212 IPR005175 -
Gma17g01270 287 PIRSF ESCAROLA 14 287 IPR014476 GO:0003680
Gma17g01270 287 Gene3D - 100 235 - -
Gma17g01270 287 ProSiteProfiles PPC domain profile profile. 97 233 IPR005175 -
Gma17g01270 287 MobiDBLite consensus disorder prediction 1 92 - -
Gma17g01270 287 MobiDBLite consensus disorder prediction 26 46 - -
Gma17g01270 287 MobiDBLite consensus disorder prediction 229 248 - -
Gma17g01270 287 Pfam Plants and Prokaryotes Conserved (PCC) domain 101 214 IPR005175 -
Gma17g01270 287 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 7 287 IPR014476 GO:0003680
Gma17g01270 287 SUPERFAMILY AF0104/ALDC/Ptd012-like 97 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01270 Gma-Chr17 11240905 11242839 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01270 1 287 AT-hook Motif Nuclear Localized (AHL) Family AT4G22810 54.985 4.90e-84 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01270 - - gmx:100795257 501.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01270 17 11240905 11242839 Gma17g01270 17 11240905 11242839 ECH
Gma17g01270 17 11240905 11242839 Gma05g00515 05 4939682 4941572 GST