Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01253 ATGAGTTTCTCTCATCTCCTCCTTCATCTTTGTTTGTTGGTTGCATTTAATCCACAGCTACTAGTTCTTGGAAATGCAGAATTAAGAGCACTCATGGACTTGAAATCTTCTTTGGACCCACAAGACAAGCTCCTTGGCTCGTGGATCAGTGATGGCGATCCATGCAGTGGTTCTTTCTTGGGGGTTGTGTGCAACGAGCACAACAAAGTGGCTAATATATCATTGCCAGGAAGAGGTCTTTCTGGGGTTGTCTCTCCTGCTGTGGCTGAACTCAAATGCTTGTCAGGTTTATACTTGCATTACAACTATCTCTCTGGGGACATACCAAGAGAGATTGTAAATCTTAAAGAATTGCTCGATCTTTATCTCAACTTTAATAATCTATCTGGAACCATTCCTCCTGATATCGCTAACATGACTAGTCTCCAAGTGCTGCAGTTAGGCTATAACCAGCTAGAGGGTAACATACCTGAGGAATTGGGTTCGTTGAAGCAGCTTAATGATATTTCTTTGCAACATAACAAATTAGCTGGTCAAATTCCTCAAAGCTTGGGTTCATTGGAGAAGCTAAGGAGGCTATATTTGAGCTATAACAACTTCAATGGCACGATACCTGCAGCACTAGCTGATATTGCAAACTTAGAAATTCTAGATATTCAAAACAATTCTCTTTCAGGGACTGTTCCTTCTGCATTGCAGAGATTAAGGGAAGGATTCCAAGGTGCAAACAACCAAGGTCTCTGTGGAGATGGCTTTTCTACTTTGAAAGCTTGCAATAAAGATACAATATTTGGCGTTAGTCAAATTAGTGCCCCAAATATATCCATAAACAGAATTCCTCCAATAACATTCCCAAAGCCTGTAAATACCCACTTGCATTGTAACCAGACCCCTTGCTCAAAATCAAGAAGCTTTCTTCATCTTGTCATTGCTGCAAGTGTTACAACTACTGTTATCACACTCATAAGTTCTGGACTTTTCATATTTGTCAGATACCGCCGCCAAAGGCAGAGGGTTAGGAACACATCAGATTATTCTGAAGGCCAACGTAGTCCTTACCAGCCTAAAGAGTTCTACAGAAGTTCATCTCCACTTGTTAATCTTGAGTATTATTATGATGGTTGGGATTCATTGGCTGATGGTCAAAATGAGAGTGGATTATCCCTTGAATATTTGAACCGTTTTAGATTCAATATTGATGAGATTGAATCAGCAACACAGCACCTTTCTGAGGCCAATTTATTGAGTAAGAGCAAATTTTCAGCAGTCTATAAAGGAGTTCACAGAGACGGTTCTCTTGTGGCTATTATAAGCATTAGTGTGACTTGCTGCAAAACCGAGGAAGGTGAATTTTTGAAGGGGTTGAGCCTGTTAACCTCACTAAGACATGAAAACATTGTTAAGATGAGAGGCTTCTGTTACTCGAGGAGTCGAGGTGAATGGTTTTTTGTCTATGATTTTGCGACCAGAGGTAATCTGTCTCAATATCTTGACAAGGAAGATGGAAGTGACCATGTAATTGAATGGTCCAAGAGAGTTTCTATCATCAAGGGAATTGCAAAAGGTATTGGTTATTTGCACAACAATGAAGCAAGCAAGCCAATAATAGTACACCAAAACATTTCAGTTGAAAAAGTTATTCTAGATCATGAATTTAACCCCTTGATCACGGATGCTGGCCTCCCTAAGCTTCTTGCAGATGATGTTGTCTTCTCAGCTCTTAAAGCAAGTGCTGCCATGGGATACCTAGCTCCTGAATATATTACTACAGGTCGCTTTACTGAGAAGAGTGACATATATGCATTTGGGGTTATAGTCCTTCAAGTTCTATCTGGAAAGGCATTGATAGGGGGTTCAATCCGGGAAGCAGTTGAAGCTTTCAGATTTGAAGACTTTGTTGACACAAATCTGAAGGGAGCTTATTCTAAATCCGAAGCTGCGATTCTTTCAAAACTTGCAATTCAGTGCACCCTTGAAGTGCCAGAGCAAAGGCCAACTATGGTGGAGGTGATTCAAGAGCTGACCATGCTTCCTAATCCTTCTTCACATTCTTCATAA 2058 0.4052 MSFSHLLLHLCLLVAFNPQLLVLGNAELRALMDLKSSLDPQDKLLGSWISDGDPCSGSFLGVVCNEHNKVANISLPGRGLSGVVSPAVAELKCLSGLYLHYNYLSGDIPREIVNLKELLDLYLNFNNLSGTIPPDIANMTSLQVLQLGYNQLEGNIPEELGSLKQLNDISLQHNKLAGQIPQSLGSLEKLRRLYLSYNNFNGTIPAALADIANLEILDIQNNSLSGTVPSALQRLREGFQGANNQGLCGDGFSTLKACNKDTIFGVSQISAPNISINRIPPITFPKPVNTHLHCNQTPCSKSRSFLHLVIAASVTTTVITLISSGLFIFVRYRRQRQRVRNTSDYSEGQRSPYQPKEFYRSSSPLVNLEYYYDGWDSLADGQNESGLSLEYLNRFRFNIDEIESATQHLSEANLLSKSKFSAVYKGVHRDGSLVAIISISVTCCKTEEGEFLKGLSLLTSLRHENIVKMRGFCYSRSRGEWFFVYDFATRGNLSQYLDKEDGSDHVIEWSKRVSIIKGIAKGIGYLHNNEASKPIIVHQNISVEKVILDHEFNPLITDAGLPKLLADDVVFSALKASAAMGYLAPEYITTGRFTEKSDIYAFGVIVLQVLSGKALIGGSIREAVEAFRFEDFVDTNLKGAYSKSEAAILSKLAIQCTLEVPEQRPTMVEVIQELTMLPNPSSHSS 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01253 685 Gene3D Transferase(Phosphotransferase) domain 1 489 682 - -
Gma17g01253 685 ProSiteProfiles Protein kinase domain profile. 409 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g01253 685 Gene3D Ribonuclease Inhibitor 137 259 IPR032675 -
Gma17g01253 685 SUPERFAMILY Protein kinase-like (PK-like) 384 677 IPR011009 -
Gma17g01253 685 SUPERFAMILY L domain-like 28 235 - -
Gma17g01253 685 Gene3D Ribonuclease Inhibitor 26 136 IPR032675 -
Gma17g01253 685 PANTHER LEUCINE RICH REPEAT RECEPTOR KINASE 20 675 - -
Gma17g01253 685 Pfam Leucine Rich Repeat 213 235 IPR001611 GO:0005515
Gma17g01253 685 Gene3D Phosphorylase Kinase; domain 1 377 487 - -
Gma17g01253 685 Pfam Protein tyrosine and serine/threonine kinase 413 674 IPR001245 GO:0004672|GO:0006468
Gma17g01253 685 PANTHER OS01G0253100 PROTEIN 20 675 IPR045271 GO:0004714|GO:0006468
Gma17g01253 685 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Gma17g01253 685 SMART LRR_typ_2 115 138 IPR003591 -
Gma17g01253 685 SMART LRR_typ_2 211 234 IPR003591 -
Gma17g01253 685 SMART LRR_typ_2 139 163 IPR003591 -
Gma17g01253 685 SMART LRR_typ_2 187 210 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01253 Gma-Chr17 11062241 11066029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01253 22 522 Miscellaneous Gene Families AT4G22730 55.382 0.0 539
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Gma17g01253 PK_Tyr_Ser-Thr 1.4e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01253 - - gmx:100784155 1321.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01253 17 11062241 11066029 Gma05g00499 05 4740226 4743532 GST