Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01243 ATGGGAAGGCAACCCTGCTGTGACAAACTTGGGGTGAAGAAGGGTCCATGGACTGCTGAGGAAGACAAGAAGCTCATCAACTTCATTCTCACCAATGGCCAATGCTGTTGGCGCGCCGTGCCAAAGCTCGCTGGCCTCAAGCGCTGTGGCAAGAGTTGTCGCCTTCGTTGGACGAATTATCTTCGTCCAGACTTGAAGAGAGGGCTACTCACAGAGGCAGAGGAGCAACTTGTTATTGATCTCCATGCCCGTCTTGGCAACAGGTGGTCCAAGATTGCTGCCAGGTTACCCGGAAGAACAGACAATGAGATTAAAAATCATTGGAACACCCATATCAAGAAAAAACTCCTTAAGATAGGTATTGATCCCGTTACTCATGAGCCTCTCAAAAAACAAGCTGCAGCATCTTCTCAGGATAGTTCATCCTCCCCTGCAGAGCATTTGCCGCAACCTGGCAATAACCTTGATGATCAGGTCAAAGAAACTGAAGGGATTCTTCTCAACTCAGAGGAGAATTCAAGTTCATCACAAGCTGAAAATTCTTCTGGGGATGATTCACTTTTGCTAGATAGCATTTGCAGCGACGATTCTCTATTAAACAGCATGTGGCTGGATGAAACTCCTCTGGTGGAAGCATTATGGGACACAACACCTAACCTTGAGAATACTAGTAATAACATGGGTTTGTTACCATCTTGGGAGGATAATTGTGCTTGGTTATTGGACTGTCAAGACTTTGGTATTCATGATTTTGGGTTTACCTGTTTCAACGAGATAGAGTCACATGCACTGCAAACGATAGGAATGAAGGAAGAGGGGCATTAG 825 0.457 MGRQPCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLKRCGKSCRLRWTNYLRPDLKRGLLTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKIGIDPVTHEPLKKQAAASSQDSSSSPAEHLPQPGNNLDDQVKETEGILLNSEENSSSSQAENSSGDDSLLLDSICSDDSLLNSMWLDETPLVEALWDTTPNLENTSNNMGLLPSWEDNCAWLLDCQDFGIHDFGFTCFNEIESHALQTIGMKEEGH 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01243 274 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 259 - -
Gma17g01243 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gma17g01243 274 SMART sant 66 114 IPR001005 -
Gma17g01243 274 SMART sant 13 63 IPR001005 -
Gma17g01243 274 MobiDBLite consensus disorder prediction 131 149 - -
Gma17g01243 274 CDD SANT 16 61 IPR001005 -
Gma17g01243 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gma17g01243 274 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma17g01243 274 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Gma17g01243 274 Gene3D - 71 146 - -
Gma17g01243 274 Gene3D - 12 67 - -
Gma17g01243 274 PANTHER PROTEIN ODORANT1-LIKE 2 259 - -
Gma17g01243 274 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma17g01243 274 CDD SANT 71 112 IPR001005 -
Gma17g01243 274 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma17g01243 274 MobiDBLite consensus disorder prediction 129 157 - -
Gma17g01243 274 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01243 Gma-Chr17 10975505 10977619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01243 1 266 MYB Transcription Factor Family AT4G12350 54.514 5.77e-99 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma17g01243 Myb_DNA-binding 2.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01243 K09422 - gmx:100786965 531.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01243 17 10975505 10977619 Gma05g00490 05 4675095 4678631 GST