Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01237 ATGGCTGCAACGCTTCAACATTGTAGCTTCTTGTTGATAACAACATTTACATGGATGTTCATATTAATCATCGGAAAGCCACCAATAGTAGCGGGTACATTTCAGCCTAGTCAATGGACCCTTGCCCATGCCACATTTTATGGTGATGAGTCTGCTTCTGCCACTATGGGAGGAGCATGTGGGTACGGAAATTTGCTCATAAACGGTTACGGGAAAGACACAGCAGCTTTGAGTTCGACATTGTTCAACAACGGGTATGCATGTGGGACTTGTTATCAGATACGTTGTGTTCAATCGAGTGCATGCTATTCCAATGTGCCTTACACTACAGTGACTGCCACAAATCTTTGCCCTCCTAATTGGGCCCAGGCCTCTGATAACGGAGGCTGGTGCAACCCACCACGTACACATTTTGACATGTCCAAGCCCGCTTTCATGAAAATTGCACAGTGGCAAGCTGGAATCATTCCTGTTATGTACCGCAGAGTACCTTGCGTAAGAAGTGGGGGGATACGATTCTCTTTCCAAGGAAACGGGTATTGGTTATTGGTGTACGTGATGAATGTTGGAGGTGGAGGAGATATTGCTAACATGTGGGTGAAGGGAAGTGGAACAGGGTGGATTAGTATGAGCCACAATTGGGGGGCTTCATACCAGGCATTTGCAACATTGGGTGGCCAAGCTCTTTCCTTTAAGGTTACTTCCTACACAACCAAAGAGACTATAATAGCATGGAATGTTGCTCCTACCAACTGGGGCGTAGGACTAACTTATTCCTCCAATGTCAACTTCATTTAA 798 0.4574 MAATLQHCSFLLITTFTWMFILIIGKPPIVAGTFQPSQWTLAHATFYGDESASATMGGACGYGNLLINGYGKDTAALSSTLFNNGYACGTCYQIRCVQSSACYSNVPYTTVTATNLCPPNWAQASDNGGWCNPPRTHFDMSKPAFMKIAQWQAGIIPVMYRRVPCVRSGGIRFSFQGNGYWLLVYVMNVGGGGDIANMWVKGSGTGWISMSHNWGASYQAFATLGGQALSFKVTSYTTKETIIAWNVAPTNWGVGLTYSSNVNFI 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01237 265 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 57 170 IPR007112 -
Gma17g01237 265 Pfam Lytic transglycolase 74 160 IPR009009 -
Gma17g01237 265 SUPERFAMILY Barwin-like endoglucanases 38 188 IPR036908 -
Gma17g01237 265 PANTHER EXPANSIN 2 265 - -
Gma17g01237 265 Pfam Expansin C-terminal domain 171 249 IPR007117 -
Gma17g01237 265 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 180 260 IPR007117 -
Gma17g01237 265 SUPERFAMILY PHL pollen allergen 167 260 IPR036749 -
Gma17g01237 265 PRINTS Expansin signature 69 83 IPR002963 GO:0009664
Gma17g01237 265 PRINTS Expansin signature 109 119 IPR002963 GO:0009664
Gma17g01237 265 PRINTS Expansin signature 128 145 IPR002963 GO:0009664
Gma17g01237 265 PRINTS Expansin signature 145 158 IPR002963 GO:0009664
Gma17g01237 265 PRINTS Expansin signature 169 181 IPR002963 GO:0009664
Gma17g01237 265 PRINTS Expansin signature 181 202 IPR002963 GO:0009664
Gma17g01237 265 PRINTS Expansin signature 216 237 IPR002963 GO:0009664
Gma17g01237 265 PANTHER EXPANSIN-A15 2 265 IPR002963 GO:0009664
Gma17g01237 265 SMART dpbb_1 74 160 IPR007112 -
Gma17g01237 265 Gene3D - 170 265 IPR036749 -
Gma17g01237 265 PRINTS Expansin/Lol pI family signature 38 53 IPR007118 GO:0005576
Gma17g01237 265 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576
Gma17g01237 265 PRINTS Expansin/Lol pI family signature 78 96 IPR007118 GO:0005576
Gma17g01237 265 PRINTS Expansin/Lol pI family signature 153 169 IPR007118 GO:0005576
Gma17g01237 265 PRINTS Expansin/Lol pI family signature 207 221 IPR007118 GO:0005576
Gma17g01237 265 PRINTS Expansin/Lol pI family signature 246 260 IPR007118 GO:0005576
Gma17g01237 265 Gene3D - 28 165 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01237 Gma-Chr17 10926292 10927924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01237 16 264 Expansin Gene Family AT1G12560 68.675 6.13e-125 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01237 - - gmx:100781459 567.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01237 17 10926292 10927924 Gma17g01237 17 10926292 10927924 ECH
Gma17g01237 17 10926292 10927924 Gma05g00485 05 4607506 4609356 GST
Gma17g01237 17 10926292 10927924 Gma01g02155 01 56850278 56851866 PCT
Gma17g01237 17 10926292 10927924 Gma11g00250 11 2008085 2009080 PCT