Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01233 ATGGTGAGGGGGAAAACTCAGATGAAGCGCATCGAAAATGAGACGAGTAGGCAAGTAACGTTCTCCAAGAGAAGGAACGGGTTGCTCAAGAAGGCCTTTGAGCTTTCGGTGCTGTGTGAGGCTGAAGTCGCACTCATCATCTTCTCTACCAGAGGGAGGCTTTATGAGTTCTCCAGTTCAAGATGCTCCAGTGTAAATAAAACAGTTGAACGGTATCAAAGGAAGATCAAGGACCTGGGTGTCAGCAACAAAGGAATCCATGAAAATACACAGCATCTGAAGGAAGGTGATATGAGCATGGCAAAGAAGATCGAGCATCTTGAAGATTCAAGAAGGAAGCTTTTGGGAGATGAATTGGATAAATGCAGTATTGACGAGTTACAACAGCTAGAGAACCAGCTCGAACGCAGCTTGGACAAAATTAGGGCAAGAAAGAATCAATTGTTCAGGGAGCGAATCGAGAACCTAAAACAAGAGGAAAAGTGCTTACTCGAAGTAAATAAACGCTTACGAGAGCAGTATCGGATTGACCGACAACGTTGTTTGACCGACAACGTTACAGAAAAAGAGGCAGAAGAGGTGGAGACGGAGTTATTCATAGGAAGACCTGAGAGAAGAATGCCGTTGAAGTTGAAATCTGCAACACATAGTGCTCATAAATACATAGCGTAA 672 0.439 MVRGKTQMKRIENETSRQVTFSKRRNGLLKKAFELSVLCEAEVALIIFSTRGRLYEFSSSRCSSVNKTVERYQRKIKDLGVSNKGIHENTQHLKEGDMSMAKKIEHLEDSRRKLLGDELDKCSIDELQQLENQLERSLDKIRARKNQLFRERIENLKQEEKCLLEVNKRLREQYRIDRQRCLTDNVTEKEAEEVETELFIGRPERRMPLKLKSATHSAHKYIA 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01233 223 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Gma17g01233 223 ProSiteProfiles K-box domain profile. 90 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma17g01233 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma17g01233 223 Pfam K-box region 89 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma17g01233 223 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Gma17g01233 223 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
Gma17g01233 223 PANTHER MADS-BOX PROTEIN SOC1 1 205 - -
Gma17g01233 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gma17g01233 223 PANTHER MADS BOX PROTEIN 1 205 - -
Gma17g01233 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gma17g01233 223 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma17g01233 223 Coils Coil 124 173 - -
Gma17g01233 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma17g01233 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma17g01233 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01233 Gma-Chr17 10881833 10890808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01233 1 206 MADS-box Gene Family AT4G22950 57.273 1.00e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma17g01233 K-box 2.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01233 - - gmx:100782713 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01233 17 10881833 10890808 Gma17g01233 17 10881833 10890808 ECH
Gma17g01233 17 10881833 10890808 Gma07g00732 07 7724465 7731274 ECH
Gma17g01233 17 10881833 10890808 Gma18g02072 18 54198129 54204023 ECH
Gma17g01233 17 10881833 10890808 Gma09g02438 09 49721879 49727253 ECH
Gma17g01233 17 10881833 10890808 Gma05g00480 05 4560012 4567301 GST