Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01232 ATGCAAGAAGCAGGGCTGGGAATGGGAATGGGAATGATGAGCGGAGAAGTATCCGCCGCCGGGGACCACCACCGTCAAGTGAAGGCGGAGATAGCCAACCACCCACTCTATGAACAGCTTCTATCTGCACACGTGTCATGCCTCCGCGTCGCCACACCTATCGATCAGTTGCCGCTCATCGACGGACAGTTATCGCAGTCCCACCATCTCCTCCGCTCTTATGCCTCACACCATTCCCATTCCCTCTCGCCCCATGACCGACAAGAACTTGACAACTTCATGGCACAATATTTGATTGTGTTATGTACGTTCAAAGAGCAGCTTCAGCAACATGTGAGGGTGCATGCCGTGGAGGCTGTGATGGCCTGCCGTGATATTGAAAGTACCTTGCAAGCTCTGACAGGAGTCAGTTTGGGAGAAGGAACAGGTGCAACAATGTCAGATGATGAAGATGATTTGCAGATGGATGGCTCTTTAGATCAGTCTAGCGCTGACGGGCATGACATGATGGGATTTGGTCCATTGCTTCCTACAGAATCTGAAAGGTCCCTGATGGAAAGAGTTCGTCAGGAGCTTAAGATTGAGCTCAAGCAGGGTTTTAAGTCAAGAATTGAAGATGTTAGGGAGGAAATATTAAGGAAGCGGAGAGCTGGGAAATTACCAGGTGACACAACATCGGTTTTAAAGGCCTGGTGGCAGCAACATGCTAAGTGGCCCTACCCAACTGAAGATGACAAGGCAAAACTTGTGGAGGAGACAGGGTTGCAGCTGAAGCAAATCAATAATTGGTTCATCAATCAAAGGAAACGCAACTGGCACAGCAACTCTCAATCGGTTAACTCTCTGAAGTCCAAGCGCAAGAGAGAGTATGCCCACTAA 879 0.4937 MQEAGLGMGMGMMSGEVSAAGDHHRQVKAEIANHPLYEQLLSAHVSCLRVATPIDQLPLIDGQLSQSHHLLRSYASHHSHSLSPHDRQELDNFMAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIESTLQALTGVSLGEGTGATMSDDEDDLQMDGSLDQSSADGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKAWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVNSLKSKRKREYAH 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01232 292 SUPERFAMILY Homeodomain-like 213 278 IPR009057 -
Gma17g01232 292 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 4 288 - -
Gma17g01232 292 SMART HOX_1 213 278 IPR001356 GO:0003677
Gma17g01232 292 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 4 288 - -
Gma17g01232 292 Pfam Homeobox KN domain 231 270 IPR008422 GO:0003677|GO:0006355
Gma17g01232 292 SMART KNOX1_2 25 69 IPR005540 GO:0003677|GO:0005634
Gma17g01232 292 Pfam KNOX1 domain 27 68 IPR005540 GO:0003677|GO:0005634
Gma17g01232 292 Gene3D - 210 286 - -
Gma17g01232 292 Pfam KNOX2 domain 83 134 IPR005541 GO:0003677|GO:0005634
Gma17g01232 292 SMART KNOX2_2 80 135 IPR005541 GO:0003677|GO:0005634
Gma17g01232 292 CDD homeodomain 214 275 IPR001356 GO:0003677
Gma17g01232 292 ProSiteProfiles ELK domain profile. 191 211 IPR005539 GO:0003677
Gma17g01232 292 ProSiteProfiles 'Homeobox' domain profile. 211 274 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01232 Gma-Chr17 10863166 10868714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01232 1 287 Homeobox Transcription Factor Family AT1G62990 77.133 5.67e-167 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gma17g01232 KNOX2 1.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01232 - - gmx:100782179 572.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01232 17 10863166 10868714 Gma17g01232 17 10863166 10868714 ECH
Gma17g01232 17 10863166 10868714 Gma05g00479 05 4545932 4551950 GST
Gma17g01232 17 10863166 10868714 Gma01g02159 01 56880966 56887718 PCT
Gma17g01232 17 10863166 10868714 Gma11g00246 11 1966141 1972258 PCT