Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01230 ATGGCGTCGAACCACGAGATGGATCAAGACGACGACGGAGGAGCAACCGACCTCAGCACCAGCGACGCCGAAACCACCACCACCAACCTCAATGGAGTCCCCAAACAGCACAACGCGTTTGAAGAAGAAACAACGGGGTTTCAAGTCTTGCCGCTGAAAAAGGAGGAGCCAACATATTCGGACCCGAACATGGGGATTACTCCCGTCGCGATGCAGGTTCcggtcaaaccggcaaagcgctcctccacgaaggaccgccacacgaaagtggaagggcgcggccgcaggatccgaatacccgccacctgcgccgcccggatcttccagctgacccgagagctcggccacaagtccgacggcgagacCGTCCGGTGGCTCCTGGAGCACGCCGAGCCGGCCATCATCGAGGCCACCGGCACCGGTACAGTTCCGGCCATCGCGGTCTCCGTTGGCGGCACGCTCAAAATCCCAACCACCTCATCGAACGAGAAAGAAGCCGTCGCCGACGCCTCAAACAAGAAGCGGAAACGCCCCTCAAACAGCGAGTTCGTGGACATAAACATAAACGACAGCGTTTCGCAGTCGTCCGGTCTGGCCCCGGTTCATGTGGCGCATGGCCTGGTCCCGGTCTGGGCCGTGACTAACCCCAGCATGGTGGTCCCCGCTAACGCCTTCTGGATGACACCCAACCCCCCCATGGGACCCGCAAACCAGCAGCATCAGTTATGGGCCTTATCTCCCTCCGTCTTCAACGTCGCGGCCAGGCCCATATCGCCTCTGGTCACAACAAATATTCCAGAAGCATGGCCCATTATGACGGCGTGCAGTAACGACTCCAACTCCGCCGTTAGCACGAGCACGGTGGGGGCTAAGGTGGCAACGGAGTCCAGCATGGCACCCAGTGTTAGTTCTAGTGGGACCAAGAGTGCCAGGACTCGGCTATTAAGGGATTTTTCGCTCCAAATTTACGATAAGCAAGAGTTGCAGTTCTTGGGCCGCTCTGGGACTCACGCGCAGAGTTAG 1023 0.4995 MASNHEMDQDDDGGATDLSTSDAETTTTNLNGVPKQHNAFEEETTGFQVLPLKKEEPTYSDPNMGITPVAMQVPVKPAKRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEPAIIEATGTGTVPAIAVSVGGTLKIPTTSSNEKEAVADASNKKRKRPSNSEFVDININDSVSQSSGLAPVHVAHGLVPVWAVTNPSMVVPANAFWMTPNPPMGPANQQHQLWALSPSVFNVAARPISPLVTTNIPEAWPIMTACSNDSNSAVSTSTVGAKVATESSMAPSVSSSGTKSARTRLLRDFSLQIYDKQELQFLGRSGTHAQS 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01230 340 PANTHER TRANSCRIPTION FACTOR TCP9-LIKE 16 338 - -
Gma17g01230 340 MobiDBLite consensus disorder prediction 167 181 - -
Gma17g01230 340 MobiDBLite consensus disorder prediction 14 35 - -
Gma17g01230 340 ProSiteProfiles TCP domain profile. 83 137 IPR017887 -
Gma17g01230 340 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 16 338 IPR005333 GO:0003700
Gma17g01230 340 Pfam TCP family transcription factor 82 173 IPR017887 -
Gma17g01230 340 MobiDBLite consensus disorder prediction 159 181 - -
Gma17g01230 340 MobiDBLite consensus disorder prediction 1 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01230 Gma-Chr17 10840375 10841546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01230 42 337 TCP Transcription Factor Family AT2G45680 44.940 3.95e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gma17g01230 TCP 7.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01230 - - gmx:100781096 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01230 17 10840375 10841546 Gma17g01230 17 10840375 10841546 ECH
Gma17g01230 17 10840375 10841546 Gma05g00477 05 4528731 4530259 GST