Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01224 ATGGCATCATCATCATCATCGAAGAGGCATCCATTGTACCATGGAATCCGTTGCCGCGGAGGAAAATGGGTTACTGAAATCCGCGAACCGCGAAAAACAAACCGCATATGGCTGGGGACGTTCCTGACGCCGGAGATGGCGGCCGCCGCCTACGATGTGGCGGCGTTGGCCCTGAAAGGCAACGAGGCGGTTCTTAACTTCCCTGACTCGGTTGGCAGGTATCCGGTGCCGGCATCCAATTCCCCTTCGGACATCCGCTTCGCTGCCATTGCTGCTGCAGAACTCATGAAGCCTGAAGCCAACAACAACAACAACGTTAATGCATCAACAACAAATAATGCAGCAGTTCAATCTGATAGCAATGATGTTTTACCTTCGTTTGAAACTGAGTTTATGGACGAGGAAGCCATATTCTCCATGCCAAGTTTGCTGGTTGACATGGCTGGGGGAATGTTGCTATCTCCTCCCAGAATGAGCCCTCCCTCCGATAACGAAAGTAATTATGTTGGAGAAACTTTGTGGAACTTTTGA 531 0.5028 MASSSSSKRHPLYHGIRCRGGKWVTEIREPRKTNRIWLGTFLTPEMAAAAYDVAALALKGNEAVLNFPDSVGRYPVPASNSPSDIRFAAIAAAELMKPEANNNNNVNASTTNNAAVQSDSNDVLPSFETEFMDEEAIFSMPSLLVDMAGGMLLSPPRMSPPSDNESNYVGETLWNF 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01224 176 CDD AP2 11 70 IPR001471 GO:0003700|GO:0006355
Gma17g01224 176 Pfam AP2 domain 13 60 IPR001471 GO:0003700|GO:0006355
Gma17g01224 176 ProSiteProfiles AP2/ERF domain profile. 12 68 IPR001471 GO:0003700|GO:0006355
Gma17g01224 176 SMART rav1_2 12 74 IPR001471 GO:0003700|GO:0006355
Gma17g01224 176 SUPERFAMILY DNA-binding domain 12 70 IPR016177 GO:0003677
Gma17g01224 176 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 176 - -
Gma17g01224 176 Gene3D AP2/ERF domain 12 69 IPR036955 GO:0003700|GO:0006355
Gma17g01224 176 PANTHER ETHYLENE RESPONSE FACTOR 1 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01224 Gma-Chr17 10781679 10782209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01224 7 176 AP2-EREBP Transcription Factor Family AT5G52020 51.397 5.52e-45 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gma17g01224 AP2 1.7e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01224 - - gmx:100778793 327.405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01224 17 10781679 10782209 Gma17g01224 17 10781679 10782209 ECH
Gma17g01224 17 10781679 10782209 Gma05g00470 05 4478601 4479739 GST
Gma17g01224 17 10781679 10782209 Gma01g02170 01 56991044 56992617 PCT