Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01214 ATGGCCACGACGACAACAAGGTCCCCGAACCGTTCCTCCGAGGATGCCGCCGCCGATCCCACGCCGTTCCTCGCCACTTCCTCCGACGAATCCACCTCCGGCCGCCTCCTCCTCCGCCGCCCCAGCCTCCGCGAGGCCGCGCGCTTCCTGCGCCAGGCCAGCGGCCGCCGCCTCATGCGTGAGCCGTCCATGGTGGTGCGGGAGGCGGCGGCGGAGCAACTCGAGGAGAGGCAGAGCGATTGGGCCTATTCCAAGCCCGTCGTCGTCTTGGACATTCTCTGGAACTGCGCCTTCGTCGCCGCCGCCGCCACCGTCTTGGTTCTCAGCCGCAACGAGAATCCCAACATGCCTCTCAGGCTGTGGATTGTAGGCTACGCTCTGCAGTCCGTTCTCCACGTCGCGTGCGTCTGCGTCGAGTACCGGCGCCGCCTGCGCCACCGCGAACACTCCAACGCGGCCGCCGTCTCGGGTGACGGCAGCGGGGATTTGAGTTCGCCTTCGATGGACGGCTCTGGACACTACGTGTCGTTCGACGACGATGGGATAAGTATGGCAAAGCATTTGGAATCAGCCAACACAATGTTTTCGTTTATTTGGTGGGTTGTTGGATTCTATTGGGTATCAGCTGATAGTGAAGCTTTGGTCCAAGATTCTCCTCTGCTTTACTGGTTATGTATAGCCTTCCTGGGTTTTGATGTTTTCTTTGTCGTTTTCTGTATTGCACTAGCATGCATCATTGGTATTGCTGTTTGCTGTTGTCTTCCATGTATCATTGCACTCCTGTATGCAGTTGCAGACCAGCAGGAAGGGGCATCAAAAGAAGACATTGAGCAGTTGTCAAAATTCAAGTTCCAAAGAACTGAAACTAATGAGAAACATGCTGGGAATACACAAGGAGCTGCTGGAGGAATAATGATTGAATGCGATGCTGATTCTCCCATTGAACATGTTCTTTCTGACGAGGATGCGGAATGTTGCATCTGCCTTTCTGCTTATGATGATGGGGTTGAACTTAGAAAACTTCCTTGTAGCCACCATTTTCACTGTGCCTGTGTGGACAAATGGCTGCATATCAATGCTACTTGCCCCCTCTGCAAGTACAACATCTTGAAAAGTACCAGTCATGGTCAAGACGAAGTGTAG 1143 0.5424 MATTTTRSPNRSSEDAAADPTPFLATSSDESTSGRLLLRRPSLREAARFLRQASGRRLMREPSMVVREAAAEQLEERQSDWAYSKPVVVLDILWNCAFVAAAATVLVLSRNENPNMPLRLWIVGYALQSVLHVACVCVEYRRRLRHREHSNAAAVSGDGSGDLSSPSMDGSGHYVSFDDDGISMAKHLESANTMFSFIWWVVGFYWVSADSEALVQDSPLLYWLCIAFLGFDVFFVVFCIALACIIGIAVCCCLPCIIALLYAVADQQEGASKEDIEQLSKFKFQRTETNEKHAGNTQGAAGGIMIECDADSPIEHVLSDEDAECCICLSAYDDGVELRKLPCSHHFHCACVDKWLHINATCPLCKYNILKSTSHGQDEV 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01214 380 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 380 - -
Gma17g01214 380 MobiDBLite consensus disorder prediction 1 35 - -
Gma17g01214 380 Pfam Ring finger domain 324 366 IPR001841 -
Gma17g01214 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 373 IPR013083 -
Gma17g01214 380 MobiDBLite consensus disorder prediction 1 15 - -
Gma17g01214 380 SUPERFAMILY RING/U-box 316 373 - -
Gma17g01214 380 SMART ring_2 325 365 IPR001841 -
Gma17g01214 380 CDD RING-H2_RNF111_like 324 368 - -
Gma17g01214 380 ProSiteProfiles Zinc finger RING-type profile. 325 366 IPR001841 -
Gma17g01214 380 PANTHER TARGET OF ERK KINASE MPK-1 1 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01214 Gma-Chr17 10663121 10667444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01214 25 375 C3H Transcription Factor Family AT1G68070 49.300 1.19e-114 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01214 - - gmx:100776124 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01214 17 10663121 10667444 Gma17g01214 17 10663121 10667444 ECH
Gma17g01214 17 10663121 10667444 Gma05g00459 05 4362817 4368007 GST
Gma17g01214 17 10663121 10667444 Gma01g02178 01 57068188 57073967 PCT
Gma17g01214 17 10663121 10667444 Gma11g00237 11 1848593 1854103 PCT