Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01200 ATGGTTTCGACGAGACGCAGTGGATCTCTCTCTGCCAAAAGATCTTCCTCCTCGGAAGATAAATCTCCTTCGCCGAAGCGCCAAAAGGTCGACAATGGCGGTTCGTCGGAGAAATCGGTGCCGACGCCGGCGGAGAATTCCAAGGATTTATCTTCCCCGGAGCCCGTGCCTGATCCCGGAGAATGTGGCTCCGGCGACGCTCAGATCGCCGGAGCCGGTGCCGCCGATGGAGTGAGCTCTGGCAAGGGTGACGCTACGCCGGCTGTGCCTGTCACGGCACCGATTGCTGATGCCGCATGTCCGTCGTTCTCTTCGTGGATTAATTATCAGAAACAGAATCCGAATATCGAAGGTGCGCCGTGGTGCAGGTTCTTGTCGCAGTCTGCACAGAATCCTAATGTTGCTGTTTGCACACCCATTTTCACGATTGGTTCTAATAGAAGTTGCAACTTTCCACTGAATGATCAAACTATAAGTGGAAATTTATGCAAGATCAAACATACGCAGGGTGACGGAAGTGCTGTAGCTGTGCTAGAAAGTATGGGTAGCAAAGGATCTGTTCTAGTAAATGGGACACATGTCAAGAAGAATACCAGCTGTGTACTTAACTCGGGTGATGAAGTGGTTTTTGGTGTGCTTGGAAATCATTCTTATATTTTCCAGCAACTAAATACTGAGGTTGCAGTTAGGGGTGCAGAAGTTCAAAGTGGTATTGGGAAATTTCTGCCGCTTGAAAGGAGAAGCGGAGACCCTTCAGCTGTGGATGGGGCCTCTATTTTGGCTTCTCTTTCCAACAGACAGGACCTTACAAGATGGAAATCTCCATCTCAGACCTCCAGTAAACCTCACCAGGGCACCGATGTCTCTAGTCGTTCTGTTCATCATGATTGTACAGAAACTGAGCTTGATGGCTCAGAATCAACTCCAAATGTGCGGAGTGATAAAGCAGCAGAGGTTCGAACAAGTGACAAGAATTCAACAATGGATTGCAATCCAGATGCTGGTGCAGAGGCAGGCAATGTAAAAATCTCTGGGGTGAATGATTTCCTAAGGCCTTTCTTCAGGATCTTAGCTCAACCTAGTTGTAAACTGAAATTGAGCAGAAGTATCTGTAAGCAGGTGTTGGAAGAAAGAAATGGGACGCTGGATATGCAGGCTGCATCGACTTTGGGTACATCTGTGCGCTGTGCAGTGTTTAAAGCAGATGTTCATGCTGCAATACTGGATGGAAAAGAAATAGATGCTTCTTTTGACAACTTTCCTTACTATTTAAGTGAGAATACAAAAAATGTCCTGGTGGCTGCTTGCTTTATGCACCTCAGGCATAAAGAACATGAAAAGTTTACTGCAGATCTTACAACCATAAACCCTCGTATTCTTCTCTCTGGACCTGCAGGGTCTGAAATATATCAGGAGATGTTGGTAAAAGCACTTGCAAAATACTTTGGAGCTAAGTTGCTCATATTTGATAGTCATTTGCTTTTGGGTGGTTTATCTTCCAAGGAAGCTGAGCTACTCAAAGATGGACTTAATGCTGAGAAATCCTTCGGCTGCACTAAACTAAGTCCTACAGAAGACATGGCCAGGATCATGGACCCATTAGCTAGCGAAATAGAGACACCTAGCCCTTCAAATGCACCTACATCATATGGCTTTGAGTCTCAACCTAAGTTGGAAACTGATAACATGCCATCCACCTCTGGGACAGCTAAAAGTTGCTCATTCAAATTAGGTGATAGGGTGAAATTTAGCTGTTCATCTTCTTGTGGCGTATATCAGACATCTCCAAGGGGACCGTCTAATGGAAGTCGGGGGAAGGTTGTCTTACTATTTGATGATAATCCCTTGTCTAAAATTGGTGTGAGATTTGATAAACCCATACCTGATGGAGTTGATCTTGGTGGTGCCTGTGAGGGAGGTCAAGGATTTTTCTGCAATGTCACCGATCTTCGTTTGGAAAGCAGTGCTGTAGAAGAACTGGACAAATTACTTATTCATTCATTGTTTGAGGTTGTTTTTAGTGAGAGTAGAAGTGCACCATTCATTTTGTTCATGAAAGATGCTGAGAAGTCTATTGTAGGAAATGGAGATTCACATTCATTTAAAAGTAAGCTTGAAAATCTTCCAGACAATGTGGTTGTAATAGGTTCACACACACAAAATGACAGTCGCAAGGAAAAGTCACATCCTGGTGGTTTGCTTTTTACAAAATTTGGTAGCAATCAGACTGCCCTTCTCGACTTGGCTTTCCCAgatagttttggacgattgcatgacagggggaaggaagccccaaaacaaaatagaactttgactaagcttttcccaaataaaattacaattcacatgccacaggatgaggctcttctagcatcctggaagcagcaactggatcgagatgttgagactctcaaaattaaaggaaatttacatcacttgcgcacaGTTCTGGGACGTTGCGGAATGGAATGTGAAGGACTTGAGACCTTGTGCATTAAGGATCAGACACTTACAAATGAAAATGCAGAGAAGATAATTGGTTGGGCTTTAAGCCACCACCTCATGCAGAATTCAGAAGCTAAGCCTGATTCAAAGCTTGTATTGTCCTGTGAGAGCATTCTGTATGGAATTGGGATCTTGCAGTCTATCCAGAATGAATCCAAGAGCCTGAAGAAATCACTTAAGGATGTTGTGACAGAAAATGAATTTGAAAAGAGGCTTTTGGCTGATGTTATTCCACCTAGTGACATTGATGTTACTTTTGATGATATTGGAGCTCTTGAAAAGGTCAAGGATACATTGAAGGAGTTGGTGATGCTTCCTTTACAGAGGCCTGAGCTTTTTTGCAAGGGACAATTAACCAAGCCCTGCAAAGGTATCCTATTATttggtccccctggaactggtaaaacaatgcttgcaaaggcaattgcTACTGAAGCTGGTGCTAACTTCATCAACATTTCTATGTCAAGTATCACATCTAAGtggtttggtgagggtgagaaaTATGTGAAAGCTGTTTTCTCTCTGGCGAGTAAAATTTCACCTAGTGTTATATTTGTTGATGAGGTTGACAGCATGTTGGGTCGGAGGGAAAACCCAGGAGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAATTGGGATGGGTTACGCACGAAGGAAACCGAGAGAGTTCTTGTCCTGGCTGCCACTAACAGGCCTTTTGACCTTGACGAGGCTGTCATAAGGAGGATGCCAAGAAGATTGATGGTAAATTTGCCAGATGCCCCTAATCGAGCAAAAATATTGAAAGTTATACTGGCAAAAGAGGAATTGTCTCCTGATGTTGATTTAGATGCAGTTGCAAGTATGACCGATGGATATTCCGGAAGTGATCTTAAGAATTTGTGTGTAACTGCAGCACATCGGCCTATTAAAGAGATATTAGAAAAGGAAAAAAAGGAACGTGCTGCTGCTCTTGCAGAAGGCCAACCAGCTCCAGCATTATGCAGCAGTGGGGACGTCAGATCTTTAAACATGGAAGACTTTAAATATGCTCATCAGCAGGTATGTGCAAGTGTTTCTTCTGAGTCAGTAAATATGACTGAGCTTTTGCAATGGAATGAATTATATGGAGAAGGGGGTTCAAGAGTAAAGAAAGCACTCAGTTATTTCATGTGA 3675 0.4049 MVSTRRSGSLSAKRSSSSEDKSPSPKRQKVDNGGSSEKSVPTPAENSKDLSSPEPVPDPGECGSGDAQIAGAGAADGVSSGKGDATPAVPVTAPIADAACPSFSSWINYQKQNPNIEGAPWCRFLSQSAQNPNVAVCTPIFTIGSNRSCNFPLNDQTISGNLCKIKHTQGDGSAVAVLESMGSKGSVLVNGTHVKKNTSCVLNSGDEVVFGVLGNHSYIFQQLNTEVAVRGAEVQSGIGKFLPLERRSGDPSAVDGASILASLSNRQDLTRWKSPSQTSSKPHQGTDVSSRSVHHDCTETELDGSESTPNVRSDKAAEVRTSDKNSTMDCNPDAGAEAGNVKISGVNDFLRPFFRILAQPSCKLKLSRSICKQVLEERNGTLDMQAASTLGTSVRCAVFKADVHAAILDGKEIDASFDNFPYYLSENTKNVLVAACFMHLRHKEHEKFTADLTTINPRILLSGPAGSEIYQEMLVKALAKYFGAKLLIFDSHLLLGGLSSKEAELLKDGLNAEKSFGCTKLSPTEDMARIMDPLASEIETPSPSNAPTSYGFESQPKLETDNMPSTSGTAKSCSFKLGDRVKFSCSSSCGVYQTSPRGPSNGSRGKVVLLFDDNPLSKIGVRFDKPIPDGVDLGGACEGGQGFFCNVTDLRLESSAVEELDKLLIHSLFEVVFSESRSAPFILFMKDAEKSIVGNGDSHSFKSKLENLPDNVVVIGSHTQNDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEAPKQNRTLTKLFPNKITIHMPQDEALLASWKQQLDRDVETLKIKGNLHHLRTVLGRCGMECEGLETLCIKDQTLTNENAEKIIGWALSHHLMQNSEAKPDSKLVLSCESILYGIGILQSIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIDVTFDDIGALEKVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAIATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKISPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKETERVLVLAATNRPFDLDEAVIRRMPRRLMVNLPDAPNRAKILKVILAKEELSPDVDLDAVASMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAALAEGQPAPALCSSGDVRSLNMEDFKYAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01200 1224 MobiDBLite consensus disorder prediction 34 49 - -
Gma17g01200 1224 SUPERFAMILY SMAD/FHA domain 108 221 IPR008984 GO:0005515
Gma17g01200 1224 MobiDBLite consensus disorder prediction 1 18 - -
Gma17g01200 1224 SMART AAA_5 956 1093 IPR003593 -
Gma17g01200 1224 MobiDBLite consensus disorder prediction 288 302 - -
Gma17g01200 1224 Pfam FHA domain 142 211 IPR000253 GO:0005515
Gma17g01200 1224 Pfam AAA+ lid domain 1113 1148 IPR041569 -
Gma17g01200 1224 ProSitePatterns AAA-protein family signature. 1063 1082 IPR003960 GO:0005524|GO:0016887
Gma17g01200 1224 Coils Coil 880 900 - -
Gma17g01200 1224 MobiDBLite consensus disorder prediction 1 85 - -
Gma17g01200 1224 CDD AAA 958 1091 - -
Gma17g01200 1224 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 76 1224 - -
Gma17g01200 1224 MobiDBLite consensus disorder prediction 537 569 - -
Gma17g01200 1224 MobiDBLite consensus disorder prediction 268 333 - -
Gma17g01200 1224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 918 1199 IPR027417 -
Gma17g01200 1224 Gene3D - 918 1199 IPR027417 -
Gma17g01200 1224 MobiDBLite consensus disorder prediction 538 569 - -
Gma17g01200 1224 Gene3D - 120 229 - -
Gma17g01200 1224 Pfam ATPase family associated with various cellular activities (AAA) 960 1089 IPR003959 GO:0005524|GO:0016887
Gma17g01200 1224 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 76 1224 - -
Gma17g01200 1224 MobiDBLite consensus disorder prediction 19 33 - -
Gma17g01200 1224 MobiDBLite consensus disorder prediction 268 287 - -
Gma17g01200 1224 Gene3D - 1092 1186 - -
Gma17g01200 1224 CDD FHA 141 221 IPR000253 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01200 Gma-Chr17 10548167 10560499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01200 919 1167 Calmodulin-binding Proteins AT3G56690 39.453 2.56e-41 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01200 - - gmx:100816731 2350.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01200 17 10548167 10560499 Gma17g01200 17 10548167 10560499 ECH
Gma17g01200 17 10548167 10560499 Gma05g00445 05 4230856 4248403 GST
Gma17g01200 17 10548167 10560499 Gma04g01889 04 49130289 49154305 PCT
Gma17g01200 17 10548167 10560499 Gma06g01522 06 14661950 14682119 PCT
Gma04g01889 04 49130289 49154305 Gma17g01200 17 10548167 10560499 PCT
Gma06g01522 06 14661950 14682119 Gma17g01200 17 10548167 10560499 PCT