Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01198 ATGGATATGGTTATAGAGGTTCTCTCCGGTGCGCACTTCTCCGGTTGGCATCCTTCTACGACGTCGTCTTGTTCTTCTCCAACATCCTCACATCATCCATTCGTCATCGGTGTCTCTGGAGGCACGGCATCGGGAAAAACCACAGTGTGTGATTTGATCATTCAGCAGCTGCAAGATCACAGAGTTGTGCTCGTTAGTCAGGATTCATTTTACCGCGGTTTGACGAATGACGAGTTGAAACGCGTTCATGAGTATAATTTTGATCATCCTAATGCATTTGATACAGAGCAACTCGTAGAAACTCTCAGTAAGCTCAAATCTGGACAGTCAGTTCAGGTTCCGTTTTACGATTTTAAGCTTCACCAGAGATCTTCTGAGAGATCCAGACAGGTCAATGCATCTGAAGTAATTATTCTGGAGGGAATATTGGTTTTTCATGAACAACGTGTCCGCAACATGATGAATATGAAGATATTTGTTGATGCAGATCCAGATGTAAGGCTTGCCCGCAGAATAAGACGGGATACTGTTGAGAGGGGTAGAGATGTTCACTCTGTACTGGAACAGTATGCAAAATTTGTTAAGCCTGCCTTCGATGATTTTATTCTTCCATCCAAAAAATATGCTGACATCATCATACCTCGCGGTGGAGACAATCTTGTAGCAATTGACTTGATTGTTCAACATATCCGCACTAAGCTTGGCCAACATAACCTCTGCAAGATATATCCAAATGTGAATGTTATACAGTCTACTTTCCAGACTAGAGGCATGCACACTCTTATTCGTGACAGGGACTTATCAAAGCATGATTTTGTTTTTTATTCAGATCGGCTAATTCGTGTGGTAGTGGAACATGGTCTTGGTTACTTGCCATTTACAGAGAAACAAGTTATCACACCTACAGGCTCAATTTATACTGGAGTTGATTTTTGTAAGAAATTATGTGGAGTATCCATTATTCGAAGTGGTGAAAGCATGGAAAATGCTTTGCGTGCTTGCTGTAAAGGAATAAAGATAGGAAAAATTCTAATTCACCGTGAAGGTGGTGATGAAACCCAGCTTATTTATGAGAAACTTCCTAAAGATATTTCGGAGAGACATGTTCTTCTCATGGACCCAGTACTTGGAACAGGTAAAACTGCTAGCCAAGCAATCGAGCTTCTTATAAAGAAGGGAGTTCCAGAGTCCCGGATAATATTTCTTAACCTCATTTCTGCTCCTGAGGGAATACATTGTGTATGTAAACATTTTCCGCATCTGAAAATTGTCACATCGGAGATTGAAGAAGGATTAAATGACCAGTTCCGTGTCATACCAGGGTTAGGAGAATTTGGTGATCGCTACTTTGGTACCGACGATTCTTAG 1368 0.4123 MDMVIEVLSGAHFSGWHPSTTSSCSSPTSSHHPFVIGVSGGTASGKTTVCDLIIQQLQDHRVVLVSQDSFYRGLTNDELKRVHEYNFDHPNAFDTEQLVETLSKLKSGQSVQVPFYDFKLHQRSSERSRQVNASEVIILEGILVFHEQRVRNMMNMKIFVDADPDVRLARRIRRDTVERGRDVHSVLEQYAKFVKPAFDDFILPSKKYADIIIPRGGDNLVAIDLIVQHIRTKLGQHNLCKIYPNVNVIQSTFQTRGMHTLIRDRDLSKHDFVFYSDRLIRVVVEHGLGYLPFTEKQVITPTGSIYTGVDFCKKLCGVSIIRSGESMENALRACCKGIKIGKILIHREGGDETQLIYEKLPKDISERHVLLMDPVLGTGKTASQAIELLIKKGVPESRIIFLNLISAPEGIHCVCKHFPHLKIVTSEIEEGLNDQFRVIPGLGEFGDRYFGTDDS 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01198 455 CDD UMPK 35 233 IPR000764 -
Gma17g01198 455 PANTHER URIDINE KINASE 12 451 - -
Gma17g01198 455 PRINTS Uridine kinase signature 33 50 - -
Gma17g01198 455 PRINTS Uridine kinase signature 63 74 - -
Gma17g01198 455 PRINTS Uridine kinase signature 108 123 - -
Gma17g01198 455 PRINTS Uridine kinase signature 165 175 - -
Gma17g01198 455 PRINTS Uridine kinase signature 179 190 - -
Gma17g01198 455 PRINTS Uridine kinase signature 201 214 - -
Gma17g01198 455 TIGRFAM udk: uridine kinase 33 233 IPR000764 -
Gma17g01198 455 Gene3D - 237 452 IPR029057 -
Gma17g01198 455 PANTHER URIDINE KINASE 12 451 - -
Gma17g01198 455 CDD PRTases_typeI 310 412 IPR000836 -
Gma17g01198 455 Gene3D - 29 236 IPR027417 -
Gma17g01198 455 ProSiteProfiles UvrC family, homology region profile. 121 217 IPR001162 GO:0009381
Gma17g01198 455 SUPERFAMILY PRTase-like 248 451 IPR029057 -
Gma17g01198 455 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 226 IPR027417 -
Gma17g01198 455 Pfam Phosphoribulokinase / Uridine kinase family 35 221 IPR006083 GO:0005524|GO:0016301
Gma17g01198 455 Pfam Uracil phosphoribosyltransferase 251 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01198 Gma-Chr17 10532468 10538395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01198 1 454 PRT Gene Family AT5G40870 76.681 0.0 743
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01198 K00876 - gmx:100816209 899.042
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01198 17 10532468 10538395 Gma17g01198 17 10532468 10538395 ECH