Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01193 ATGGCCACTTGCACTTCTCTGTCTCTTTGTCCTCACACTTTCTGTTGCCGCCACCGCCCTCACCCTACTCGCCGTTCCCTTGCGTCGTGCTCTCTCTCCCCTTCTTCCCTCCCAGATACGGATGGACCTAAAGTACTGCGTAAAAGATCTAGAAGAATAGAAGGTCCTAGAAAAAGCATGGAAGACTCTGTTCAATGCAAGATGGAAGAATTCTACGAAGGACAGGATGGGCCACCCCTCAGAGTTCTTCCCATTGGTGGGTTGGGTGAAATTGGGATGAATTGTATGCTTGTTGGCAACTATGATCGCTATATCCTCATTGATGCTGGTATCATGTTTCCAGACTATGACGAGCTTGGAGTCCAAAAGATCATACCTGATACAACATTTATAAGAAAATGGAAGCACAAAATTGAAGCAGTTATTATAACACATGGTCATGAAGATCATATTGGTGCATTGCCTTGGGTCATTCCAGCATTAGATTCTCATACACCAATTTTTGCATCATCCTTTACAATGGAGCTTATAAGGAAACGTTTGAAGGATCATGGTATTTTTGTTCCATCCCGACTCAAAGTATTTAGAACGAGGAAGAAGTTTATGGCTGGGCCATTTGAGGTAGAGCCTATCACAGTGACTCATTCTATTCCTGATTGCTGTGGACTAGTGCTCCGTTGTTCTGATGGTACCATTCTTCACACTGGGGATTGGAAGATTGATGAAACGCCATTAGATGGTAGAGTTTTTGATCGTGAAGCTCTAGAGGAACTCTCAAAAGAAGGAGTCACATTGATGATGAGTGATTCGACAAATGTACTCTCACCTGGAAGGACAACCAGTGAATCTGTTGTGGCAGATGCATTATTAAGGAATATTTCAGCTGCTAAAGGAAGGGTTATAACGACCCAGTTTGCATCCAATATACATCGTCTTGGAAGTGTGAAAGCTGCTGCTGATTTAACTGGTAGAAAGTTGGTATTTGTTGGCATGTCGTTAAGAACATATTTAGATGCAGCTTGGAAGGATGGAAAGTCTCCAATTGATCCATCTACTCTGGTGAAAGCGGAAGATATTGATGCTTATGCGCCAAAGGATTTGCTTATTGTGACAACGGGATCTCAAGCAGAGCCACGTGCTGCCTTAAATCTAGCATCTTTTGGAAGTAGTCATTCTTTCAAGCTGACAAAGGAAGATACTGTTTTGTATTCAGCTAAGGTTATACCTGGTAACGAGTCTCGTGTTATGGAAATGCTAAACCGCATATCAGAGATTGGATCAACTATAGTTATGGGGAAGAATGAATGTCTGCACACATCTGGTCATGGGTATCGTGGAGAATTAGAGGAAGTACTTAGAATTGTGAAGCCACAGCATTTTCTACCCATACATGGAGAACTCTTGTTCTTGAAGGAGCACGAATTACTTGGAAAATCAACTGGCATTCGGCACACAACTGTTATTAAGAATGGAGAGATGCTTGGAGTTTCTCATTTGAGAAATAGAAGAGTCCTTTCTAATGGTTTTATTTCACTTGGAAAAGAGAATTTGCAGTTGATGTATAGTGATGGCGAGAAAGCGTTTGGTACATCAAGTGACCTCTTTATTGATGAAAGATTGAAAATTGCATTAGATGGCATCATAGTGGTTAACATGGAAATATTTCGCCCTCAAAATTTAGACAGTCCAGTTGAGAACACCTTAAAAGGAAAAATAAGAATTACCACCAGATGCCTGTGGCTTGACAAGGGGAAGCTGTTGGATGCTCTCCATAAAGCTGCTCATGCTGCTCTTGCAAGCTGCCCTGTAAGCTGTCCACTGGCTCATATGGAAAAAATTGTGTCTGAGATGTTGAGAAAAATGGTGAGGAAGTACAGTGGCAAACGGCCTGAAGTTATTGCCATTGCCATAGAAAATCCTGCAGCTGTTCTTGCTAATGAGATAAACACAAAGTTGTCTGGAAAATTAAATGTGGATGGGATGTCGGCATTGAGAAAAGTGGTGGATGGACATGAGAAAGAGAATCAGAGAACCGAAATGCAAATAAGAGATCGTATTGATGTAGGTGGTCTACTACCTACAAAAGACAATGCTATCTCAAGTGGAGCTGAGGATGGCTTGTCTGATGCGGAGGATCCAAATGATTATTTTAAACCATTTGTTGAATCCTCTCCAGTTGAGAAGTCAATTAAAACTAACAATGGTTATGTTCCACGAAAGGAGAAGTCATCCCCATTGAAGGATGACTGTTCTGAAGACACTGAAGAATGCAATTCTGTAAATACATCAGATTCTGAACCCAAATCTTCAAAATCAGCAAAGAGAAATAAATGGAAACATGAAGAAGTTAAGAAGCTGATTGATATGCGTGGGGAACTGAATGACAGATTTCAAGTTGTGAAGGGAAGGATGGCCCTCTGGGAAGAAATATCTCAGAATTTGTTGGCTAATGGGATCAGCAGAAGTCCTGGGCAGTGTAAATCTCTGTGGACTTCTTTGTTACAGAAATATGAGCAGGAGGTGAAGAATGAAAAGAAGAACAAGAAAAAATGGCCGTATTTTGAGGACATGGAAAGGATTCTAGCTGATAACAAGACACTAGAAACAAAATGA 2613 0.4114 MATCTSLSLCPHTFCCRHRPHPTRRSLASCSLSPSSLPDTDGPKVLRKRSRRIEGPRKSMEDSVQCKMEEFYEGQDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGIMFPDYDELGVQKIIPDTTFIRKWKHKIEAVIITHGHEDHIGALPWVIPALDSHTPIFASSFTMELIRKRLKDHGIFVPSRLKVFRTRKKFMAGPFEVEPITVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGRVFDREALEELSKEGVTLMMSDSTNVLSPGRTTSESVVADALLRNISAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKSPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASFGSSHSFKLTKEDTVLYSAKVIPGNESRVMEMLNRISEIGSTIVMGKNECLHTSGHGYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTTVIKNGEMLGVSHLRNRRVLSNGFISLGKENLQLMYSDGEKAFGTSSDLFIDERLKIALDGIIVVNMEIFRPQNLDSPVENTLKGKIRITTRCLWLDKGKLLDALHKAAHAALASCPVSCPLAHMEKIVSEMLRKMVRKYSGKRPEVIAIAIENPAAVLANEINTKLSGKLNVDGMSALRKVVDGHEKENQRTEMQIRDRIDVGGLLPTKDNAISSGAEDGLSDAEDPNDYFKPFVESSPVEKSIKTNNGYVPRKEKSSPLKDDCSEDTEECNSVNTSDSEPKSSKSAKRNKWKHEEVKKLIDMRGELNDRFQVVKGRMALWEEISQNLLANGISRSPGQCKSLWTSLLQKYEQEVKNEKKNKKKWPYFEDMERILADNKTLETK 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01193 870 Gene3D - 281 431 IPR042173 -
Gma17g01193 870 Coils Coil 661 681 - -
Gma17g01193 870 MobiDBLite consensus disorder prediction 42 59 - -
Gma17g01193 870 Gene3D - 778 839 - -
Gma17g01193 870 Pfam Myb/SANT-like DNA-binding domain 775 860 IPR044822 -
Gma17g01193 870 Gene3D - 84 496 IPR036866 -
Gma17g01193 870 CDD GT1 776 838 - -
Gma17g01193 870 SUPERFAMILY Metallo-hydrolase/oxidoreductase 80 494 IPR036866 -
Gma17g01193 870 MobiDBLite consensus disorder prediction 688 778 - -
Gma17g01193 870 PANTHER RIBONUCLEASE J 1 870 - -
Gma17g01193 870 SMART Lactamase_B_5a 92 289 IPR001279 -
Gma17g01193 870 Coils Coil 827 847 - -
Gma17g01193 870 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 436 478 IPR011108 -
Gma17g01193 870 ProSiteProfiles Myb-like domain profile. 770 834 IPR001005 -
Gma17g01193 870 Pfam Beta-lactamase superfamily domain 103 239 IPR001279 -
Gma17g01193 870 CDD RNaseJ_MBL-fold 83 494 - -
Gma17g01193 870 PANTHER RNA-METABOLISING METALLO-BETA-LACTAMASE 1 870 - -
Gma17g01193 870 MobiDBLite consensus disorder prediction 27 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01193 Gma-Chr17 10470702 10479464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01193 777 862 Trihelix Transcription Factor Family AT2G38250 34.483 1.24e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gma17g01193 Lactamase_B_2 1.6e-10 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01193 - - gmx:100814619 1684.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01193 17 10470702 10479464 Gma17g01193 17 10470702 10479464 ECH
Gma17g01193 17 10470702 10479464 Gma04g01886 04 49103583 49118856 PCT
Gma17g01193 17 10470702 10479464 Gma06g01526 06 14698396 14707701 PCT
Gma04g01886 04 49103583 49118856 Gma17g01193 17 10470702 10479464 PCT
Gma06g01526 06 14698396 14707701 Gma17g01193 17 10470702 10479464 PCT