Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01186 ATGGCAACCGGTTACCGATTGTTTCTCATCCCCGCGGCAAGGCCCCTTCTCCGCAAAAACTTCTTCTTCATTTCCTCCTACTCTACTCGCGCGCTCCAACCGTGCCAGCCATCATCGTCTGCAGAGGAAAAGTCCCGAGACGTGAGGGTTTGGGCCTGGTGGGACTTCACAAAGTGCCACGTGCCCCACAATTTCGACGTTCTCAAAGTTGCCCCCACAATCATGGAGGCAATGAGAGCCAACGGCATCAGAGGCCCTCTCAACATCACCGCCTTCGGCGACGTTCTGCTCCTCTCCCGCgTCCACCAGGAAGCACTCGCCTACACCGGCGTTCGCTTCATCCACGTCAAAGGTAATGTTCGCAGCACCACCGACATTCTCGTTGACCTAATGTATTGGGTCTCGCAGAACCCTCCACCCGCGCATATACTCTTGATATCCGGCGACAGAGACTTCGCTGGCGTGTTGCATAGGTTGAGAACGAGTAACTACAATATCTTGCTCGCTACCCCAGAGAGCGCCCCTGGTGTTCTCCACAGTGCCGCCACGATAGCGTGGCATTGGTCTTCGATGCTTAAGGAAGGAAATCTTACTGGAAAATGTTTCAACCATCCACCCGATGGGCCGTATGGTTCTTGGTATGGAAGCTACAAGCCAGATTCTCTTGAAAAGCCGGCTCCAGTTGCGGCTCAGGAGGCTGCTGATGCCTCTTTGCCCAATGTGGAGGTCCACGAGCCTTCTTCTTTGGGTTCGGTTCCCAAGTCGGTTGTGAAGCAGGTTAGGCGTATATTAAGTTTGCATCCAAAAGGGATAGATATTGATGTTCTTCGCGCTGAGTTGGTGAAATGTGGTGAGCGTTTGGATAAAGGGATGTTTGGGCATAAAAGGTTTTCCCGCTTTCTGTTGTCGTTGCCACGTGTACAGCTTCGGCCTGGTGTTGAGGGTTTTCTTGCTGTACATTTGGTTCCTTCGGAATCCCCGGAACCTTGTGAGAGCAGTTCTGTGGCATCCACAATGTCTGGTGCGAAGAATAAGGAGAAAGGGTGTGCAGCGACTCCGAAGGTAAATGGTGAGGATAAAAGTAAGGTTAAGGGAGCTGATGAGAAATTCTCAATTGCCCCGATCCGTGAAAGGAGTTCGGATGACAAATCAAAGCCAGTCCAACCGAGTCCTTCACAAGGGAGATCCAATGAGGAGTATGTTGATGGTGAATCATCATCTCCTGTATTGGTTGAAAAACATGTTTGTCAGCCACCAAATAAGTTGCAGAAATCTTCTGTAGCTTGTGACAAGGTTGTGGATGTGGCTAATGCACAACACTCAGAGACTCAACTGCCACCCAAGGACAACAAAGATTCTGAAACGAAGATGGATTCCTTAAAAGTGACTTGTCAAAAATCATCTGTTGAAGACATTGTTAGGTGTGAGGATGCAGGTCATAAAAGTATGGAAAAGCATACAACTTCAGAGAATCACTCTGCTGGAAATGATCAATCAATGGTGGAAGACAATGTTATTGCAAATTATGAATCTGGAGATTTTGAAGCAAAGAACAAATGTGAGGATCCGACTAGAATGGAGGTTGATGAAGTTGTTCACAGCCCATCTTCTTCACCAGTTGATGGCTCTCCAGTTGTCCAAACACCTGGTGCAAGTCCTAAAACTAATAACAGAACTCCAACATTCTTTAGCTGGATTAGAAGCTGGTGGCCATTTGGGAGAAGCAATGAAAAGTACGATGATTTGATCGCTCTTCAGAACAAGGctgtgagtcatgttgagggttccaagttatctgaactggaccagactgttagtcaatctgaagagcccaagttatcagaactggatcaggatgttagtcatgccgaggattccaagttatctgagttggaccagactgttagtcaatttgaagagcccaagttaacagtattggatcagactgttagtcattctgCAAAGCCTGAGTTATTTTCTAGTGCTTCCTTTTGGAATAATATGGAATCTTTCATTTTTGCACCCAAGGGATCACTTCTTTTCTCCCAGTCAAGAAGCAGGGAGGATGTGGTGCATAAATTACAAAATGGTGGACCCCTGGTTCTTAGATCACTCCCCAAAGAAGACATCCTTCAATTGGTGGAATTGTTAATAACAGAGAAAAAATGGTTGGAGGAAAACCCCTCCAAAACATTTCCTTTTAAGCTAATTCGACCTGTTCAGAAGAAATCATCGGTGAACCAATCCCATGATGTAAATGGTTTGAGATCTCTCTTTATAGGTAGAACATCACAGTCAAACTTGCAAAAATCATTAGAACATGATGTGGAGAAACACAATCAGAGTATTGCTCATTCTCAAGTTTCTGCACCAACTATGGAAACAAAATATACCGAGAGATCCAGAAATGATATATTAGAAGACTGTAAAAAACTTGTGAGTGAAATGCTGAGGGAACACCCAGAGGGGTATAATATTGGTTCTTTCCAAAGACTATTTGTTGATAGGTATGGCTATCATCTTGATATACAGAAGCTTGGTTATCAAAAGTTGGCAGCCTTGCTACAGATAATGCCTGGGGTCAAATTAGAGTCCACTTATATTTTTCCTTCTGTTCCTGCTGTCTGTGATTCAGACTTGGAAACTTCTATCCTCAAAACTCAAGCAACCACTGATATTCATGCAGCTTCCAACTCAGATAGTGAATCATCTGAGTCAGCCCCCAAAGATGATAACATGGAATCCCTATGGTGTGAGGTAGGTCCTGTTTCTATCAACAATTCCGACAAGAGTGGTTTAGAATTAAAGCCAAGTCAGAAAACTATAGAACTGGATACATCAAAATCAAAGCATCCTGATTATGAACCTGTCGTATCAGATGATGAGTTTTCTGCATCTGAAGGAGATGACTCTTGTTTAACTCAATCAGCACAGCAAAGAAAGCCAAAATGTAATGAACAAGACAGTTCTTTTTGGCAAGCTATGGATTTGTGGCACAGCAGCAAGGAAGAAGAGAATAGTGGCAAGAAATCAAACAATGTTGACAGCTTGGACATTTCTCTGGCTGAAATTTTAGATTCATCCACCGAGTCAACCAGGGACACCCTTTCCCAGATTCCTTCATCGAAATACAGAGAGAATAATGGCAAGAAGTCAGACAATGTTGACAGCTTGGACACTTCTCTGGCTGATATGTTTAATTCATCATCCACTGAATCAACTACGGGTACCCTTTCCAAAATTCCATCATCAAATTATAGAGAGAAGCAACGGTCTCATAAGAACTATTCCTTTGTTGCTGATCCAGTCTTACCTAACAAGGAGAAGCTGGTTGATGACCTCAAGAAAGCAGATGAGTCAAAGATGCAAAACTGA 3375 0.4175 MATGYRLFLIPAARPLLRKNFFFISSYSTRALQPCQPSSSAEEKSRDVRVWAWWDFTKCHVPHNFDVLKVAPTIMEAMRANGIRGPLNITAFGDVLLLSRVHQEALAYTGVRFIHVKGNVRSTTDILVDLMYWVSQNPPPAHILLISGDRDFAGVLHRLRTSNYNILLATPESAPGVLHSAATIAWHWSSMLKEGNLTGKCFNHPPDGPYGSWYGSYKPDSLEKPAPVAAQEAADASLPNVEVHEPSSLGSVPKSVVKQVRRILSLHPKGIDIDVLRAELVKCGERLDKGMFGHKRFSRFLLSLPRVQLRPGVEGFLAVHLVPSESPEPCESSSVASTMSGAKNKEKGCAATPKVNGEDKSKVKGADEKFSIAPIRERSSDDKSKPVQPSPSQGRSNEEYVDGESSSPVLVEKHVCQPPNKLQKSSVACDKVVDVANAQHSETQLPPKDNKDSETKMDSLKVTCQKSSVEDIVRCEDAGHKSMEKHTTSENHSAGNDQSMVEDNVIANYESGDFEAKNKCEDPTRMEVDEVVHSPSSSPVDGSPVVQTPGASPKTNNRTPTFFSWIRSWWPFGRSNEKYDDLIALQNKAVSHVEGSKLSELDQTVSQSEEPKLSELDQDVSHAEDSKLSELDQTVSQFEEPKLTVLDQTVSHSAKPELFSSASFWNNMESFIFAPKGSLLFSQSRSREDVVHKLQNGGPLVLRSLPKEDILQLVELLITEKKWLEENPSKTFPFKLIRPVQKKSSVNQSHDVNGLRSLFIGRTSQSNLQKSLEHDVEKHNQSIAHSQVSAPTMETKYTERSRNDILEDCKKLVSEMLREHPEGYNIGSFQRLFVDRYGYHLDIQKLGYQKLAALLQIMPGVKLESTYIFPSVPAVCDSDLETSILKTQATTDIHAASNSDSESSESAPKDDNMESLWCEVGPVSINNSDKSGLELKPSQKTIELDTSKSKHPDYEPVVSDDEFSASEGDDSCLTQSAQQRKPKCNEQDSSFWQAMDLWHSSKEEENSGKKSNNVDSLDISLAEILDSSTESTRDTLSQIPSSKYRENNGKKSDNVDSLDTSLADMFNSSSTESTTGTLSKIPSSNYREKQRSHKNYSFVADPVLPNKEKLVDDLKKADESKMQN 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01186 1124 Gene3D - 800 867 IPR041966 -
Gma17g01186 1124 MobiDBLite consensus disorder prediction 532 557 - -
Gma17g01186 1124 MobiDBLite consensus disorder prediction 327 341 - -
Gma17g01186 1124 ProSiteProfiles OST-type HTH domain profile. 805 879 IPR025605 -
Gma17g01186 1124 MobiDBLite consensus disorder prediction 595 625 - -
Gma17g01186 1124 Pfam OST-HTH/LOTUS domain 805 864 IPR025605 -
Gma17g01186 1124 Pfam OST-HTH/LOTUS domain 253 310 IPR025605 -
Gma17g01186 1124 MobiDBLite consensus disorder prediction 445 459 - -
Gma17g01186 1124 MobiDBLite consensus disorder prediction 941 958 - -
Gma17g01186 1124 Gene3D - 251 327 IPR041966 -
Gma17g01186 1124 MobiDBLite consensus disorder prediction 1106 1124 - -
Gma17g01186 1124 MobiDBLite consensus disorder prediction 1012 1045 - -
Gma17g01186 1124 CDD LOTUS 806 861 - -
Gma17g01186 1124 CDD PIN_limkain_b1_N_like 49 171 - -
Gma17g01186 1124 MobiDBLite consensus disorder prediction 385 403 - -
Gma17g01186 1124 Pfam NYN domain 49 182 IPR021139 GO:0004540
Gma17g01186 1124 PANTHER EMB|CAB71880.1 23 1025 - -
Gma17g01186 1124 MobiDBLite consensus disorder prediction 324 406 - -
Gma17g01186 1124 MobiDBLite consensus disorder prediction 438 462 - -
Gma17g01186 1124 MobiDBLite consensus disorder prediction 1054 1085 - -
Gma17g01186 1124 MobiDBLite consensus disorder prediction 597 611 - -
Gma17g01186 1124 MobiDBLite consensus disorder prediction 357 384 - -
Gma17g01186 1124 MobiDBLite consensus disorder prediction 536 557 - -
Gma17g01186 1124 PANTHER LIMKAIN B LKAP 23 1025 IPR024768 GO:0005777|GO:0010468|GO:1903231
Gma17g01186 1124 MobiDBLite consensus disorder prediction 928 1124 - -
Gma17g01186 1124 MobiDBLite consensus disorder prediction 892 912 - -
Gma17g01186 1124 MobiDBLite consensus disorder prediction 968 996 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01186 Gma-Chr17 10402046 10405750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01186 39 195 C2H2 Transcription Factor Family AT5G61190 40.252 7.88e-32 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01186 - - gmx:102661134 2193.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01186 17 10402046 10405750 Gma05g00429 05 4061266 4065386 GST