Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01178 ATGGGAGGCTCTGAATCCGTTTCTGTGCCACTTTCCATTTCCAATGGCGAAGAGCCCCAATTGGGTGCATCTTCTTCCCCCGCCGCTCCTCCTGAGCCATCAGATCTCAATCACGCGGCGGAGGAAGAGGCACTCTCCAGGGAGCTTCAGAGCAAGTTGGATTTGAAGGATGGGGATGAGAGTGAAGAGAGAGTTTCGGACTTGAACGATGGTAGAGGTGTTTGTGATGAAGAAACTGGTAAGCCtgacggagatagtaggggttgggagaccaatagttggaatgaggaagtgggtgttgatgctgaagttcatgtttttggtgatggtgatgttcatgatgctggtgatggtgatgttcatgatgttggtgatggtgatgttgatgttgatgttgatgatgaagtggagaagaaggaaGGGGGAAACAGTGGTTTAGCTCAGCACTACCCTTTGAGGCCTGAAGCTGAGGACTGTGCATTTTATATTAAAACTGGGAATTGCAAGTTTGGGTTTAATTGCAAGTTCAACCACCCCATTAGGAGGAAAAGTCAGGCTGTTAAAGAGAAGGCAGGAGAAAGAGAAGAAACCACAGAAAGATCGGGCATGACAGAATGCAAGTATTATCAAAGGTCTGGGGGTTGTAAGTTTGGTAAATCTTGTAAATATAACCACACAAGAGGAAAAATTTCAACAGCACCAGCACCACTTTTGGAACTTAACTTTCTTGgcctgcctattcgtctgGGAGAGAGAGAGTGCCCCTACTACATGCGCACTGGCTCTTGTAAGTTTGGAGCAAACTGCAAGTTCAACCATCCTGACCCTACAGCTGTTGGAGGAGTAGGAGGTGATCCTGCTTCAGGGTATGGTAATGGAGGGTCTATTTCATTACAAGGTGTATCACAAACATCTGTACCCTCCTGGTCTTCTCCAAGAACATTAAATGAATCATCTCCTTTTGTGCCAATGATGCTTTCACCTACTCAAGGAGTTTCTACCCAAAGTTCTGATTGGAATGGATATCAGGCATCTGTCTACTTACCTGAGAGGAACATGCATCCACCTTCTACATTTGTCATGAACAACCCAGCAATTGATACAAATGTTTACATGCACCATCAAAAGCAGATGCCTGTTGATGAGTTTCCAGAAAGGCCTGGTGAACCTGAATGCAGCTACTTCTTAAAAACTGGGGATTGTAAGTTCAAGTCTAATTGTAAATTCAACCATCCAAAGAATCGGGTTGCAAGATTACCTCCATGCAACCTCAGTGACAAGGGTCTGCCTTTGAGACCTGACCAAAGTGTCTGCTCCCATTACAGTCGCTATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCGATAAACTTGCAGCCCGTGATGATTCCTGGACTTGGTCAGCAATCCTACTCAAACTCAGCTAGTGTTGAAGTGGCTGGGATATTTGGAAGTACAGGTGTTGTAACTGATGCGACAATTCAGCAATCTGTGTAA 1506 0.3944 MGGSESVSVPLSISNGEEPQLGASSSPAAPPEPSDLNHAAEEEALSRELQSKLDLKDGDESEERVSDLNDGRGVCDEETGKPDGDSRGWETNSWNEEVGVDAEVHVFGDGDVHDAGDGDVHDVGDGDVDVDVDDEVEKKEGGNSGLAQHYPLRPEAEDCAFYIKTGNCKFGFNCKFNHPIRRKSQAVKEKAGEREETTERSGMTECKYYQRSGGCKFGKSCKYNHTRGKISTAPAPLLELNFLGLPIRLGERECPYYMRTGSCKFGANCKFNHPDPTAVGGVGGDPASGYGNGGSISLQGVSQTSVPSWSSPRTLNESSPFVPMMLSPTQGVSTQSSDWNGYQASVYLPERNMHPPSTFVMNNPAIDTNVYMHHQKQMPVDEFPERPGEPECSYFLKTGDCKFKSNCKFNHPKNRVARLPPCNLSDKGLPLRPDQSVCSHYSRYGICKFGPACKFDHPINLQPVMIPGLGQQSYSNSASVEVAGIFGSTGVVTDATIQQSV 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01178 501 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 5 501 - -
Gma17g01178 501 Gene3D - 432 477 - -
Gma17g01178 501 Gene3D - 196 281 - -
Gma17g01178 501 SMART c3hfinal6 386 413 IPR000571 GO:0046872
Gma17g01178 501 SMART c3hfinal6 248 275 IPR000571 GO:0046872
Gma17g01178 501 SMART c3hfinal6 153 180 IPR000571 GO:0046872
Gma17g01178 501 SMART c3hfinal6 200 227 IPR000571 GO:0046872
Gma17g01178 501 SMART c3hfinal6 432 459 IPR000571 GO:0046872
Gma17g01178 501 SUPERFAMILY CCCH zinc finger 203 230 IPR036855 GO:0046872
Gma17g01178 501 SUPERFAMILY CCCH zinc finger 391 415 IPR036855 GO:0046872
Gma17g01178 501 ProSiteProfiles Zinc finger C3H1-type profile. 432 460 IPR000571 GO:0046872
Gma17g01178 501 MobiDBLite consensus disorder prediction 1 92 - -
Gma17g01178 501 Gene3D - 125 191 - -
Gma17g01178 501 Gene3D - 351 422 - -
Gma17g01178 501 SUPERFAMILY CCCH zinc finger 249 275 IPR036855 GO:0046872
Gma17g01178 501 PANTHER PROTEIN PHOSPHATASE RELATED 5 501 - -
Gma17g01178 501 MobiDBLite consensus disorder prediction 36 85 - -
Gma17g01178 501 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 157 179 IPR000571 GO:0046872
Gma17g01178 501 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 250 274 IPR000571 GO:0046872
Gma17g01178 501 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 434 458 IPR000571 GO:0046872
Gma17g01178 501 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 202 225 IPR000571 GO:0046872
Gma17g01178 501 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 388 413 IPR000571 GO:0046872
Gma17g01178 501 MobiDBLite consensus disorder prediction 1 22 - -
Gma17g01178 501 SUPERFAMILY CCCH zinc finger 430 458 IPR036855 GO:0046872
Gma17g01178 501 ProSiteProfiles Zinc finger C3H1-type profile. 248 276 IPR000571 GO:0046872
Gma17g01178 501 SUPERFAMILY CCCH zinc finger 152 181 IPR036855 GO:0046872
Gma17g01178 501 ProSiteProfiles Zinc finger C3H1-type profile. 200 228 IPR000571 GO:0046872
Gma17g01178 501 ProSiteProfiles Zinc finger C3H1-type profile. 386 414 IPR000571 GO:0046872
Gma17g01178 501 ProSiteProfiles Zinc finger C3H1-type profile. 153 181 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01178 Gma-Chr17 10318687 10322904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01178 150 500 C2H2 Transcription Factor Family AT3G02830 38.649 5.06e-75 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma17g01178 zf-CCCH 8.1e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01178 - - gmx:100809626 981.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00421 05 3981288 3985958 Gma17g01178 17 10318687 10322904 ECH
Gma17g01178 17 10318687 10322904 Gma17g01178 17 10318687 10322904 ECH
Gma17g01178 17 10318687 10322904 Gma05g00421 05 3981288 3985958 GST
Gma17g01178 17 10318687 10322904 Gma04g01861 04 48767685 48772935 PCT
Gma17g01178 17 10318687 10322904 Gma06g01548 06 15012055 15018382 PCT
Gma04g01861 04 48767685 48772935 Gma17g01178 17 10318687 10322904 PCT
Gma06g01548 06 15012055 15018382 Gma17g01178 17 10318687 10322904 PCT