Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01177 ATGGCTTCGAGCGAGGGGTTTCTGACTGATGGGCAGAGGGAACTGCTAAAAATTGCAAGTCAAAATGCGGAGAATCTGTCTTCGTCGCCGAAGTCTCCGTCGTCCTTGCTTTCTGACCATCATGTGAAAGCCCCTGCTGGTGGTAAGTCACAAACCTCTGGGATAGCCGTGAGGCATGTGCGTCGGTCGCACTCGGGAAAGTATGGGAAGGTGAAGAAGGATGGTGCTGGTGGTAAGGGTACTTGGGGAAAATTGCTTGATACAGATATTGATTCTCACATAGACCGGAATGATCCAAATTATGACAGTGGCGAGGAACCCTATCAGCTGGTTGGAACTACTGTTGCTGACCCCTTGGATGAATTCAAGAAAGCAGTGGTATCCATCATAGAGGAATATTTCAGTAATGGGGATGTCGAATTGGCATCATCTGACCTCAGAGAACTTGGCTCAAGTGAATATTATCCATACTTCATTAAACGCCTTGTGTCCATGGCAATGGACAGGCACGATAAGGAGAAAGAAATGGCTTCTGTTCTGCTTTCAGCACTGTATGCTGATGTCATCAGCCCTGCACAGATTAGGGATGGGTTTTTTATGCTTATTGAATCTTCTGATGATCTTGCTGTGGATATACTGGATGCAGTTGACATCCTTGCATTATTCTTAGCACGAGCTGTTGTTGATGACATTCTTCCTCCAGCCTTTCTTGCCAGGGCTAGGAAGGCTCTTCCAGAATCTTCCAAGGGAGTTCAGGTAATCCAAACTGCTGAAAAGAGTTATCTCTCAGCTCCACACCATGCGGAACTTGTGGAAAGGCGATGGGGTGGTAGCACTCACATAACTGTTGAAGAAGTGAAGAAGAAGATAGGTGATTTACTTAGAGAATATGTGGATAGTGGTGACACATTGGAGGCCTGTAGATGTATACGTGAGTTGGGGGTTTCATTCTTCCATCATGAGGTTGTTAAGAGGGCTTTGATACTTGCCATGGAGATTCGTTCGGCAGAACCTCTAATGTTGAAGTTATTAAAAGAAGCAGCTGAAGAAGGACTTGTTAGTTCCAGCCAAATGGTGAAAGGGTTTTCTCGTTTGGCAGAATCCCTAGATGATCTTGCTCTTGATATTCCATCAGCTAAGGCATTGTTTCAGTCATTTGTCCCCAAGGCAATATCTGAAGGATGGCTTGATGCTTCACTTACCAAACCTGCAACTGAAGATGGGGAAATCCAAGAAGATGAGAAGGTGAGAAAGTACAAAAAGGAATCTGTAACTATAATTCATGAGTATTTCCTTTCTGACGACATTCCTGAACTGATTCGAAGTCTTGAAGATCTTGGAGCACCTGAGTATAATCCAATATTTTTGAAGAAGCTAATAACTCTTGCTATGGACCGAAAGAACAGGGAAAAGGAAATGGCCTCTGTACTGCTCTCTGCTCTTCATATAGAGATCTTCTCAACAGAGGATATAGTTAATGGTTTTGTCTTGCTTCTGGAAAGTGCAGAAGATACAGCACTGGATATATTGGATGCTTCAAATGAGCTGGCTCTGTTCTTAGCTCGGGCTGTTATTGATGATGTATTGGCTCCACTGAATTTGGAAGAAATTGGCAGCAGGTTACCACCAAAATGCAGTGGTAGTGAAACTGTGCGTATGGCTCGGTCACTCATTGCTGCTCGTCATGCTGGTGAGAGGCTATTGAGATGCTGGGGTGGAGGGACTGGTTGGGCTGTGGAGGATGCCAAGGACAAAATCATGAAGCTCTTAGAAGAGTACGAAAGTGGCGGGGTTGTGAGTGAAGCTTGCCAATGCATCCGTGATCTGGGAATGCCTTTCTTTAACCATGAGGTAGTGAAGAAAGCTTTGATTATGGCGATGGAGAAAAAGAATGATCATATGCTAGATCTACTGCAGGAGTGCTTCAGTGAGGGCCTGATCACCATTAATCAGATGACAAAAGGTTTCACCCGAATAAAGGATGGTCTTGATGATCTGGCTCTGGACATTCCAAACGCCAAGGAGAAATTTGGCTTCTATGTGGAGCATGCTCAGTCGAAGGGCTGGCTTCTACCCTTATTTGATTCGCCTGCCACAGATGCCTAA 2106 0.4487 MASSEGFLTDGQRELLKIASQNAENLSSSPKSPSSLLSDHHVKAPAGGKSQTSGIAVRHVRRSHSGKYGKVKKDGAGGKGTWGKLLDTDIDSHIDRNDPNYDSGEEPYQLVGTTVADPLDEFKKAVVSIIEEYFSNGDVELASSDLRELGSSEYYPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPAQIRDGFFMLIESSDDLAVDILDAVDILALFLARAVVDDILPPAFLARARKALPESSKGVQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIGDLLREYVDSGDTLEACRCIRELGVSFFHHEVVKRALILAMEIRSAEPLMLKLLKEAAEEGLVSSSQMVKGFSRLAESLDDLALDIPSAKALFQSFVPKAISEGWLDASLTKPATEDGEIQEDEKVRKYKKESVTIIHEYFLSDDIPELIRSLEDLGAPEYNPIFLKKLITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVLLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEIGSRLPPKCSGSETVRMARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALIMAMEKKNDHMLDLLQECFSEGLITINQMTKGFTRIKDGLDDLALDIPNAKEKFGFYVEHAQSKGWLLPLFDSPATDA 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01177 701 ProSiteProfiles MI domain profile. 581 700 IPR003891 -
Gma17g01177 701 SMART ma3_7 286 397 IPR003891 -
Gma17g01177 701 SMART ma3_7 582 691 IPR003891 -
Gma17g01177 701 SMART ma3_7 122 233 IPR003891 -
Gma17g01177 701 SMART ma3_7 419 530 IPR003891 -
Gma17g01177 701 MobiDBLite consensus disorder prediction 1 74 - -
Gma17g01177 701 PANTHER PROGRAMMED CELL DEATH 4 1 692 IPR039778 GO:0045892
Gma17g01177 701 MobiDBLite consensus disorder prediction 15 36 - -
Gma17g01177 701 SUPERFAMILY ARM repeat 119 279 IPR016024 -
Gma17g01177 701 ProSiteProfiles MI domain profile. 121 242 IPR003891 -
Gma17g01177 701 Pfam MA3 domain 583 690 IPR003891 -
Gma17g01177 701 Pfam MA3 domain 420 529 IPR003891 -
Gma17g01177 701 Pfam MA3 domain 286 397 IPR003891 -
Gma17g01177 701 Pfam MA3 domain 122 233 IPR003891 -
Gma17g01177 701 ProSiteProfiles MI domain profile. 418 539 IPR003891 -
Gma17g01177 701 SUPERFAMILY ARM repeat 416 574 IPR016024 -
Gma17g01177 701 SUPERFAMILY ARM repeat 282 403 IPR016024 -
Gma17g01177 701 Gene3D - 569 695 - -
Gma17g01177 701 Gene3D - 272 405 - -
Gma17g01177 701 ProSiteProfiles MI domain profile. 285 406 IPR003891 -
Gma17g01177 701 SUPERFAMILY ARM repeat 578 694 IPR016024 -
Gma17g01177 701 Gene3D - 407 562 - -
Gma17g01177 701 Gene3D - 115 262 - -
Gma17g01177 701 PANTHER PROGRAMMED CELL DEATH PROTEIN 4-LIKE 1 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01177 Gma-Chr17 10310747 10314324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01177 585 681 Eukaryotic Initiation Factors Gene Family AT5G57870 33.000 6.99e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01177 - - gmx:100809081 1337.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01177 17 10310747 10314324 Gma17g01177 17 10310747 10314324 ECH
Gma17g01177 17 10310747 10314324 Gma05g00420 05 3971519 3977203 GST