Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01176 ATGGATGGTAGGAGGCATTCTGTTGATATTCCTATTTCCAAAACTCTTATGGCACTGAGGAGAGTGAGGTCATTGAGGGATCCATCAACTAATGGTGTTAGCAGACTCTCTCCTTTGATTGATGATGGAGATTGGGAAGATGGTTCTAGTAATGGTGTTTCTCTGAGTTTGAGGTTCCTGAATGGTTCTCATGCATGTGATTCTAATGGTAATGGTCTTTTAAGATCAAGTAGTTTAGATTTTAAGGGACAAAGGGAGCAGGACACTGCTGAGTTTGAATTAGACATGTGGAACTCTAAGATGAACCATTGTGGGATCTCATGTCAGGAAGGGCAACAAGATGATGGACTAGTTTACTCTAATCCTAAGCAGCAATGTATTTCTGGAGACAAATCTTCAAATGAAAGCTGTTGTAGCAACCATGAAGGTAGAGGATTGGATTTGGTTTCCATCATGCCTTCTTCTAATCATTTGAAGGATGGAGAGTCCTGCTATTTGTCAACTGCAACAAGAGTAGAACACTCAAAGTCGGCAAGAAAATCCCTACGCAAGAATCAAGTGAAACCATCGGAAGTGATTGGTGATATTGCAAGCCATGTAGGAAGCCAACAATGCCTTTCTGTTTTTGATGCACCCTCAGCTCGTAGTGCCTCGGAACATATCACTCAGGATGAGGACGTTTTGGATAATTACCATGGATGTGGATTAAGGAGTTGTTGGTCAAAGTCACCAAGGTTTAGAGAATCAAATCATTATTCTGAAATAGAAGGCCTTCCCTTGATATTGCAACACGTAAGTGAGACGGATCTCAATGGACATAGAAACATGAGACACATTGGTGGTGAAATTAGTCCAACTTTGGAAACTCCTAGAAGTTTATCCATGAAATTCAGGCCAAAATCTTTCAGTGATTTGGTTGGGCATAATGTGATAGGAAAGTCTCTTTTGGGTGCTATCTCTACAGGAAGGATATCATCATTTTATCTCTTCCATGGACCACGTGGCACTGGCAAAACCTCTGCGTCTAGGATATTTGCCGCTGCACTGAATTGCCTCTCCCCTCTGGAGCAAAAGCCATGTGGTCTGTGTAGAGAATGTGTTTTGTTCTTTTTGGGAAGAAGTAAACATGTTAAGGAAATTGATTCTTTGAGAATCAACCGTGCAGACAAGGTTAAGTCCCTTGTTAAGAATGCATGCATTCCTCGAGTTTCCTCGTGTTTTAAGGTGTTCATTGTTGATGAGTGCCAGTTATTGCATGCAGAAACATGGGCGTGTCTTTTGAATAGCCTAGAGAATGTTTCTCCACATGTGGTTTTTGTGATGATCACTCCTGATTTGGATAAGCTTCCTCCGAGTGCACTTTCCCGGGCTCAGAGGTATCACTTTGCAAAGATTAAAGATGTTGACATTGCAATAAGATTGGAAAAGATTTGTGTTGAAGAAGGTCTTGAATCTGAACAAGTTGCTTTGGACTTCATTGCTGCTAGATCCTGTGGTTCTCTTAGGGATGCTGAAACTATGCTTGATCAACTGAGTTTGCTTGGTAAAAAAATTACCATTTCCTTAGTCCACGAGCTTACTGGGGTCATTTCTGATGATGAATTGCTTGATTTGCTGGACTTGGCTTTATCTACTGACACTTCAAATACAGTTATAAGAGCCCGGGAACTTGTTAGGACAAGGATAGATCCTTTACAACTTATATCACAGTTGGCAAATCTTATTATGGACATTCTTGCAGGGAAATTTGAACTTGGTGATTCGGAAATCAGAAGATTTTGTAATAGATACACCTCGGAAGCAGACCTGCAGAAACTAAGTCGTGCATTAAGAATACTGTCTGAAACAGAGAAGCAGTTGAGAATTTCCAAGAATCAAACAACATGGTTCACTGCAGCTCTTCTACAGCTGAGCTCCGTAGAATATTCATCTGCGGATACAAATGATACTAAGTTGTGTGCACGATCTGCGTCCAATAGAGATGGTGATATCTGCAGTACATCTCCTAAAGGGGACAGCTTGGAGCATCTTGCTACAACAGGTCAATGTGATGACAAGTCAGATACATTAGGATTAGGAGTACGGGAGGATCACAGAAGAACATTGGATTCTATATGGTATAAAGCTACTGAGATGTGTCAATCTAACAGGCTCAAAACTTTTCTCAGGAAACAGGGGAAGTTGTCTTCAGTTTGTATTAGTCAAGGCCGTGCAGTTGCCGAGTTGGAGTTCCACCACCGTGACTATGTAAGTAGGGCTGAGAAGTCTTGGAGGCTGATTGCAAGTTCTCTGCAGTTCATATTGGGTTGTAACCTTGAGCTCAGAATCAATTGTGTACCTTCTTGTACTTCGGATTCTATCTATGCTAAATTGAAGAGGACATCTTTCAGTTTCTTCGGTTGTTCTCGGAGAATTCGTTGGAAATCTATATCATCTAATGAACAAGGAAGTGAATCAGACTATGCTGATTACACCTCTCAAAGGCCCATGATGAAGACTCAAACTCTAACTTGTTCCTCTAATCGTGAACCTCGGGTGCCATCATTTGAGTCCTACAATGGAATGCAGGTCGTGACAACTTTGAGAAGTAGTGAAGGAAATTTGCTAAGCTCAGGGAAAATGTTTTTGAATAGGCCAGATCAAGAGACTCCAAGAATTTCTTGTTCAGGAGTTGATTCTCTCAAGGAAGAGGGATGCAACTATGAGCTTCTAGCTCCATCAACCCTTGATTTAGATAATCAGTCTGACTGCTTTCCCCGAACTCGCTGGCTTCATAAAAAGTTCTCTTCTTCATATGCATCACAAGAGAAGAATTTTGTTTTATCTATCCCCAAGTTCAAATGTTCTGAGGCTTATGGATATGATCTGGAACCCCGTGTCTTTTCCCACAGCTCTAACAACTGCATCAATGCCATTGAGGAAAAGTAG 2928 0.4122 MDGRRHSVDIPISKTLMALRRVRSLRDPSTNGVSRLSPLIDDGDWEDGSSNGVSLSLRFLNGSHACDSNGNGLLRSSSLDFKGQREQDTAEFELDMWNSKMNHCGISCQEGQQDDGLVYSNPKQQCISGDKSSNESCCSNHEGRGLDLVSIMPSSNHLKDGESCYLSTATRVEHSKSARKSLRKNQVKPSEVIGDIASHVGSQQCLSVFDAPSARSASEHITQDEDVLDNYHGCGLRSCWSKSPRFRESNHYSEIEGLPLILQHVSETDLNGHRNMRHIGGEISPTLETPRSLSMKFRPKSFSDLVGHNVIGKSLLGAISTGRISSFYLFHGPRGTGKTSASRIFAAALNCLSPLEQKPCGLCRECVLFFLGRSKHVKEIDSLRINRADKVKSLVKNACIPRVSSCFKVFIVDECQLLHAETWACLLNSLENVSPHVVFVMITPDLDKLPPSALSRAQRYHFAKIKDVDIAIRLEKICVEEGLESEQVALDFIAARSCGSLRDAETMLDQLSLLGKKITISLVHELTGVISDDELLDLLDLALSTDTSNTVIRARELVRTRIDPLQLISQLANLIMDILAGKFELGDSEIRRFCNRYTSEADLQKLSRALRILSETEKQLRISKNQTTWFTAALLQLSSVEYSSADTNDTKLCARSASNRDGDICSTSPKGDSLEHLATTGQCDDKSDTLGLGVREDHRRTLDSIWYKATEMCQSNRLKTFLRKQGKLSSVCISQGRAVAELEFHHRDYVSRAEKSWRLIASSLQFILGCNLELRINCVPSCTSDSIYAKLKRTSFSFFGCSRRIRWKSISSNEQGSESDYADYTSQRPMMKTQTLTCSSNREPRVPSFESYNGMQVVTTLRSSEGNLLSSGKMFLNRPDQETPRISCSGVDSLKEEGCNYELLAPSTLDLDNQSDCFPRTRWLHKKFSSSYASQEKNFVLSIPKFKCSEAYGYDLEPRVFSHSSNNCINAIEEK 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01176 975 Gene3D - 286 463 IPR027417 -
Gma17g01176 975 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 292 637 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Gma17g01176 975 CDD AAA 328 456 - -
Gma17g01176 975 CDD HLD_clamp_pol_III_gamma_tau 465 528 IPR045085 -
Gma17g01176 975 Gene3D - 468 528 - -
Gma17g01176 975 Pfam DNA polymerase III, delta subunit 312 465 - -
Gma17g01176 975 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 107 949 - -
Gma17g01176 975 PANTHER DNA POLYMERASE III SUBUNIT GAMMA/TAU 107 949 - -
Gma17g01176 975 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 316 515 IPR027417 -
Gma17g01176 975 Gene3D - 529 641 - -
Gma17g01176 975 SUPERFAMILY post-AAA+ oligomerization domain-like 530 638 IPR008921 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01176 Gma-Chr17 10297575 10301911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01176 283 620 Core DNA Replication Machinery Family AT1G21690 24.927 8.16e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01176 - - pvu:PHAVU_003G207500g 1568.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01176 17 10297575 10301911 Gma17g01176 17 10297575 10301911 ECH
Gma17g01176 17 10297575 10301911 Gma05g00419 05 3963514 3967896 GST
Gma17g01176 17 10297575 10301911 Gma04g01854 04 48665179 48669460 PCT
Gma17g01176 17 10297575 10301911 Gma06g01555 06 15102837 15108021 PCT
Gma04g01854 04 48665179 48669460 Gma17g01176 17 10297575 10301911 PCT
Gma06g01555 06 15102837 15108021 Gma17g01176 17 10297575 10301911 PCT