Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01175 ATGGCCACCACTTTTCTCTCTCTCCTCTTCCTCCTCTTCTCTCTCCTCACCCCGACCCTCATTTCCTCTTCCCCTGTCCAAGACCCTGAATTTGTGGCCCAAGAAGTTCACAGGAAAATCAATGCTTCTGTAGCTAGAAGGAATTTGGGGTACTTGTCCTGCGCAACAGGGAACCCCATTGATGATTGCTGGAGGTGCGACCCAAACTGGGAGAAGAACCGCCAGAGGCTAGCGGATTGTGCGATTGGTTTCGGCAAAAACGCCATCGGAGGAAAGAACGGAAAAATCTACGTGGTGACAGATTCCGGCGACGACGATCCGGTAACCCCCAAGCCGGGAACTCTCCGTTATGCAGTTATTCAAGACGAGCCTCTCTGGATCATCTTCGCAAGAGACATGGTGATCAAGCTGAAGGAAGAGCTGATCATGAACTCATTCAAAACCATTGATGGAAGAGGTGCTAGCGTGCACATTGCGGGTGGTCCATGCATAACGATACAGTATGTAACAAACGTTATAATCCATGGGATTAACATTCATGATTGTAAGCAAGGTGGGAATGCTATGGTGCGGGACTCACCACGGCACTACGGGTGGAGGACCATATCGGACGGTGATGGCGTGTCGATCTTTGGAGGGAGTCACGTATGGGTTGACCATTGCTCTTTGTCTAACTGCAATGATGGGTTGATCGATGCCATTCATGGGTCTACTGGGATTACCATCTCCAACAATTACATGACTCACCATGACAAGGTCATGCTTTTGGGCCACAGTGATTCCTACACTCAGGACAAGAGCATGCAGGTCACTATTGCTTTCAACCACTTTGGTGAAGGCCTAGTTCAAAGAATGCCAAGGTGTAGGCATGGATATTTTCATGTGGTGAACAATGACTATACCCACTGGGAAATGTATGCCATCGGGGGAAGTGCTAATCCTACCATCAATAGCCAAGGAAACAGGTTTGTTGCACCCGATGACAGATTCAGCAAAGAGGTGACAAAGCATGAGGATGCACCAGAGAGTGAATGGAAAGGATGGAATTGGAGGTCAGAAGGGGACTTGTTGGTAAACGGTGCGTTTTTCACGGCATCGGGGGCTGGAGCCTCCTCTAGCTATGCAAGAGCATCTAGCTTGAGTGCAAGGCCATCTTCATTGGTGGGGTCCATAACCACTGGTGCGGGTGCACTCAGCTGTAGGAAGGGTTCCCGCTGCTGA 1221 0.498 MATTFLSLLFLLFSLLTPTLISSSPVQDPEFVAQEVHRKINASVARRNLGYLSCATGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGKNGKIYVVTDSGDDDPVTPKPGTLRYAVIQDEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNVIIHGINIHDCKQGGNAMVRDSPRHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTGITISNNYMTHHDKVMLLGHSDSYTQDKSMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKHEDAPESEWKGWNWRSEGDLLVNGAFFTASGAGASSSYARASSLSARPSSLVGSITTGAGALSCRKGSRC 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01175 406 Gene3D - 57 399 IPR012334 -
Gma17g01175 406 PANTHER PECTATE LYASE 18-RELATED 1 403 IPR045032 GO:0030570
Gma17g01175 406 SUPERFAMILY Pectin lyase-like 36 400 IPR011050 -
Gma17g01175 406 PANTHER PECTATE LYASE 1 403 - -
Gma17g01175 406 Pfam Pectate lyase 139 323 IPR002022 -
Gma17g01175 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Gma17g01175 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Gma17g01175 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Gma17g01175 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Gma17g01175 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Gma17g01175 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Gma17g01175 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Gma17g01175 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Gma17g01175 406 SMART amb_all 132 329 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01175 Gma-Chr17 10273617 10275499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01175 1 406 Polysaccharide Lyase AT5G63180 79.707 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01175 K01728 - gmx:100101868 778.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00418 05 3937715 3939693 Gma17g01175 17 10273617 10275499 ECH
Gma18g00110 18 877923 879819 Gma17g01175 17 10273617 10275499 ECH
Gma17g01175 17 10273617 10275499 Gma17g01175 17 10273617 10275499 ECH
Gma17g01175 17 10273617 10275499 Gma05g00418 05 3937715 3939693 GST
Gma17g01175 17 10273617 10275499 Gma04g01853 04 48634973 48637427 PCT
Gma17g01175 17 10273617 10275499 Gma06g01556 06 15131642 15133940 PCT
Gma04g01853 04 48634973 48637427 Gma17g01175 17 10273617 10275499 PCT
Gma06g01556 06 15131642 15133940 Gma17g01175 17 10273617 10275499 PCT