Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01174 ATGGCTCCCCAAACCATTTCCATTCTCAACCTCTTACCAGAACCTGATGTCTTCATTCACACTTCCCATGGAACACGCATTCCAGCCCACGCACCCATTCTGGCTTCTATGTCCCCGGTTCTGGAGAACTTGATAGATCGCCCACGTAAGCATCGGAGCTCCGAGAGAATAATCCAAATCCACGGCGTCCCCTGCGACGCTGTCACCGCCTTCGTCCGATTCCTCTACTCCTCCAGGTGTACGGAGGAAGAGATTGACCAGTACGGGATGCACCTCCTTGCATTGTCCCACGTGTACATGGTGCAGCAACTGAAACAGAGGTGCATCAAGGGTTTGACCCACCGTTTGACGACGGAGAGCGTCGTCGACGTGCTGCAACTCGCGCGTCTCTGCGACGCGCCGGATCTCCACCTCCGCTGCATGAAGCTCCTCGCCAAGAATTTCAAGGCGGTGGAAGCAACCGAGGGATGGAAGTTCCTCGTGAAACACGACCCCTGGCTCGAACTCGACATTCTCCGCTTCATCGACGAACACGAAACAAGGAAAAAGAAATCGAGGAGGTATAGGATGGAACAGGGGATATACGCGGAGCTGAGCGAGGCGATGGAGTGTTTGGAACACATATGCTATGAGGGGTGCACCCACGTTGGACCGTACGATGCGGAGGTGAAGAGGGAGAGGACGCCGTGTGGGAGATTCGCCACGTGCCAGGGTCTTCAGGTTCTGATCCGCCACTTTGCCACGTGCGAGAAGAAGGTTCGCGGTGGCTGCGTGCGGTGCAAGAGAATGTGGCAGCTCTTTCGACTCCATTCCTATGTTTGTCACGACACCGATTCCTCCTGCAAGGTTCCCTTTTGCAGGCAATTTCAATTGAGAATGCAGCAAGAGAAAAGGAAAGATGATGCTAAGTGGAAACTACTAGCGAGGAAGGTGGCCTCAGCCAAAGTCATGTCTTCATTGTCACTGCCAAAGAGGAAGCGAGATGAAGAAACAAGAGTGACGATGGACAATCCCGGGATTAGAAGTTTTAAATTACTATGA 1041 0.5322 MAPQTISILNLLPEPDVFIHTSHGTRIPAHAPILASMSPVLENLIDRPRKHRSSERIIQIHGVPCDAVTAFVRFLYSSRCTEEEIDQYGMHLLALSHVYMVQQLKQRCIKGLTHRLTTESVVDVLQLARLCDAPDLHLRCMKLLAKNFKAVEATEGWKFLVKHDPWLELDILRFIDEHETRKKKSRRYRMEQGIYAELSEAMECLEHICYEGCTHVGPYDAEVKRERTPCGRFATCQGLQVLIRHFATCEKKVRGGCVRCKRMWQLFRLHSYVCHDTDSSCKVPFCRQFQLRMQQEKRKDDAKWKLLARKVASAKVMSSLSLPKRKRDEETRVTMDNPGIRSFKLL 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01174 346 SMART BTB_4 15 116 IPR000210 GO:0005515
Gma17g01174 346 Gene3D TAZ domain 189 315 IPR035898 -
Gma17g01174 346 CDD BACK 117 164 - -
Gma17g01174 346 Gene3D - 117 188 - -
Gma17g01174 346 ProSiteProfiles BTB domain profile. 15 84 IPR000210 GO:0005515
Gma17g01174 346 Pfam TAZ zinc finger 199 286 IPR000197 -
Gma17g01174 346 Pfam BTB/POZ domain 15 114 IPR000210 GO:0005515
Gma17g01174 346 PANTHER BTB/POZ AND TAZ DOMAIN PROTEIN 1 344 - -
Gma17g01174 346 SUPERFAMILY POZ domain 16 114 IPR011333 -
Gma17g01174 346 Gene3D Potassium Channel Kv1.1; Chain A 13 116 IPR011333 -
Gma17g01174 346 SMART TAZ_2 192 287 IPR000197 -
Gma17g01174 346 SUPERFAMILY TAZ domain 191 295 IPR035898 -
Gma17g01174 346 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 1 344 IPR044513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01174 Gma-Chr17 10260656 10263453 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Gma17g01174 BTB 1.1e-11 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01174 - - gmx:100807120 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01174 17 10260656 10263453 Gma17g01174 17 10260656 10263453 ECH
Gma17g01174 17 10260656 10263453 Gma05g00417 05 3921124 3924664 GST
Gma17g01174 17 10260656 10263453 Gma04g01852 04 48613012 48615882 PCT
Gma04g01852 04 48613012 48615882 Gma17g01174 17 10260656 10263453 PCT