Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01169 ATGCCTATGTCTCTGTCTCTGTCAACCGTGCCTGCGTTCAATTCTCTCACAATGGCTGAATCCTGCCTCCTATCTCTCCCTTCCCTCTTCTACGCCAAAAACAAAACCCTTTCTCTCTCAATTCCCACTAATCCTCTCAACCTGCAATTCCCATGCTCAAACTCTTCGCTTTTTCCCCTCACCACCAAGACTACGCGCCACTCTTCTCTCCTCACATTCGTGGCTCAGACATCTGGTTGGGCCAAAGAAGGGGAGGAGGAAGAAGCCGCGTGGGAGAACCAAGGCGACACTGCGTGGGGAACTGAAGAAGGTGGCGATGATATAGAAGATGGCGGCGAAGGGGGTTTCGCTGAAGAAGAAGCTGAAGAAGTTAAGATCTTCGTTGGGAACCTGCCTTTCGACTTCGACAGCGAGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAGGTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACCATGAGTACAATCGAAGAGCTTGAGAAGGCTGTCAAGATGTTCAGTGGTTATGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCACAGCCTGAACGCCCACCGCGCCCACCACAATCCTTTAGAGTCTATGTTGGCAACTTGCCATGGGATGTTGACAATTCTCGGCTGGAGCAAATTTTCAGTGAACATGGTAAGGTTGAGGATGCTCGGGTGGTCTATGACAGAGAGACTGGTCGATCACGTGGTTTTGGCTTTGTCACGATGTCCAGTGAGACTGATATGAATGATGCAATTGCTGCCCTTGATGGTCAGAGTTTGGATGGGAGGGCAATCAGAGTGAATGTTGCAGCCCAAAGGCCTAAACCTAGCTCGTTTTGA 909 0.4983 MPMSLSLSTVPAFNSLTMAESCLLSLPSLFYAKNKTLSLSIPTNPLNLQFPCSNSSLFPLTTKTTRHSSLLTFVAQTSGWAKEGEEEEAAWENQGDTAWGTEEGGDDIEDGGEGGFAEEEAEEVKIFVGNLPFDFDSEKLASLFEQAGTVEVAEVIYNRATDRSRGFGFVTMSTIEELEKAVKMFSGYELNGRVLTVNKAAPKGAQPERPPRPPQSFRVYVGNLPWDVDNSRLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAALDGQSLDGRAIRVNVAAQRPKPSSF 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01169 302 CDD RRM_HP0827_like 125 202 - -
Gma17g01169 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 217 295 IPR000504 GO:0003723
Gma17g01169 302 MobiDBLite consensus disorder prediction 89 114 - -
Gma17g01169 302 PANTHER RIBONUCLEOPROTEIN 8 95 - -
Gma17g01169 302 PANTHER RIBONUCLEOPROTEIN 110 301 - -
Gma17g01169 302 CDD RRM_HP0827_like 218 293 - -
Gma17g01169 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 126 195 IPR000504 GO:0003723
Gma17g01169 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 219 289 IPR000504 GO:0003723
Gma17g01169 302 SUPERFAMILY RNA-binding domain, RBD 120 211 IPR035979 GO:0003676
Gma17g01169 302 SUPERFAMILY RNA-binding domain, RBD 209 299 IPR035979 GO:0003676
Gma17g01169 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 124 202 IPR000504 GO:0003723
Gma17g01169 302 Gene3D - 75 205 IPR012677 -
Gma17g01169 302 Gene3D - 206 301 IPR012677 -
Gma17g01169 302 PANTHER OS02G0815200 PROTEIN 110 301 - -
Gma17g01169 302 PANTHER OS02G0815200 PROTEIN 8 95 - -
Gma17g01169 302 SMART rrm1_1 125 198 IPR000504 GO:0003723
Gma17g01169 302 SMART rrm1_1 218 291 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01169 Gma-Chr17 10217076 10219178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01169 126 296 Eukaryotic Initiation Factors Gene Family AT3G16380 34.239 1.24e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01169 - - gmx:100804984 551.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00411 05 3874521 3877228 Gma17g01169 17 10217076 10219178 ECH
Gma17g01169 17 10217076 10219178 Gma17g01169 17 10217076 10219178 ECH
Gma17g01169 17 10217076 10219178 Gma05g00411 05 3874521 3877228 GST
Gma17g01169 17 10217076 10219178 Gma04g01845 04 48543601 48546196 PCT
Gma17g01169 17 10217076 10219178 Gma06g01564 06 15203276 15206025 PCT
Gma04g01845 04 48543601 48546196 Gma17g01169 17 10217076 10219178 PCT
Gma06g01564 06 15203276 15206025 Gma17g01169 17 10217076 10219178 PCT