Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01168 atggagatggaacgcgtcttcgagtttcctcacactcacatggatcggcgcccgagaaagagagcgagattgggctgggacatccctgaggtccccaagGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTTGCTCCTTCAAGGGGTCCCTCAGAAAATACCACTAGTTCTCTATTTGTTAAGCCAGTTGCTCGAAATGGTTCTCCCCCTTGGCGAGATGATGACAAAGATGGGCATTACATGTTTGCGCTTGGAGAAAATTTAACTTCTCGCTATAAGATACATAGCAAAATGGGTGAAGGAACTTTTGGGCAGGTCTTAGAATGCTGGGATAGAGAAAGGAAGGAAATGGTTGCCGTAAAAATTGTCCGTGGTATTAAGAAGTATCGAGAAGCAGCCATGATAGAAATTGAGGTGTTGCAACAGCTTGGTAAACACGATAAAGGAGGCAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTATTGGAATGTATAGCATTCATGCATGACTTGCGCATGATTCATACTGACCTGAAGCCTGAAAACATACTACTAGTTTCACCAGAGTATGTCAAAGTTCCTGACTACAAGAGTTCATCTAGATCACCAAGTTCCTATTTCAAGAGAGTTCCCAAATCAAGTGCTATAAAGGTTATTGATTTTGGCAGCACCACTTATGAGCGAGAAGATCAGAATTACATTGTATCAACTCGTCATTATAGGGCTCCTGAAGTTATCCTTGGTATATATACATACTGTAAATGCTGTGGAAAGAATGCCTGTCTAACTGTGTTTTGCATGTTGACACATGACAATCATGAGAAGGGCTATATGCAAGCTAAAGTTGATTTTGGCAATGATGTTTTAGGACTTGGCTGGAGCTATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGGGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATGGAAAGGGTACTTGGTCCATTACCACAGCCCATGTTGAAGAGAGTCGACCGACATGCTGAGAAGTATGTTAGAAGGGGTAGATTGGACTGGCCTGAGGGTGCAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTCTTGCAGGGGTTACTTAGATATGACCCCTCTGAAAGACTTACAGCCAAGGAAGCTCTTAGACATTCCTTCTTTATGAGAGATCAATTTAGAAGATAA 1419 0.3876 MEMERVFEFPHTHMDRRPRKRARLGWDIPEVPKAQVGLFCGQDVGTISSFAPSRGPSENTTSSLFVKPVARNGSPPWRDDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAVKIVRGIKKYREAAMIEIEVLQQLGKHDKGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLECIAFMHDLRMIHTDLKPENILLVSPEYVKVPDYKSSSRSPSSYFKRVPKSSAIKVIDFGSTTYEREDQNYIVSTRHYRAPEVILGIYTYCKCCGKNACLTVFCMLTHDNHEKGYMQAKVDFGNDVLGLGWSYPCDIWSVGCILVELCTGGALFQTHENLEHLAMMERVLGPLPQPMLKRVDRHAEKYVRRGRLDWPEGATSRESIKAVMKLPRLQNLVMQHVDHSAGDLIHLLQGLLRYDPSERLTAKEALRHSFFMRDQFRR 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01168 472 SUPERFAMILY Protein kinase-like (PK-like) 85 467 IPR011009 -
Gma17g01168 472 PANTHER KINASE AFC1 1 301 - -
Gma17g01168 472 PANTHER KINASE AFC1 320 472 - -
Gma17g01168 472 Gene3D Phosphorylase Kinase; domain 1 73 176 - -
Gma17g01168 472 Pfam Protein kinase domain 340 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g01168 472 Pfam Protein kinase domain 98 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g01168 472 CDD PKc_CLK 85 465 - -
Gma17g01168 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Gma17g01168 472 SMART serkin_6 98 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g01168 472 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 301 - -
Gma17g01168 472 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 320 472 - -
Gma17g01168 472 Gene3D Transferase(Phosphotransferase) domain 1 177 470 - -
Gma17g01168 472 ProSiteProfiles Protein kinase domain profile. 98 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01168 Gma-Chr17 10196661 10200656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01168 84 465 EF-hand Containing Proteins AT5G22840 28.172 1.37e-34 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Gma17g01168 Pkinase 2.2e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01168 K08287 - gmx:100804452 864.374
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01168 17 10196661 10200656 Gma05g00409 05 3839156 3843879 GST