Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gma17g01162 | ATGGCAATTTCTTCAGCAGCAGCCTCAACCTCAAAACTCTCATACCCTCAACATATCCACCATTCTTCTCCTTCACCCTCCTCCAATTGCCTCTTCCTCAAAACACACACACCCTCCACAACCCACCTCTCCTCTTCCTTCATCCACCCCTCCACAATCCTCCCCCTCCCCCCCgCCGCTGCCACTACCCTCCGCCGCTCCTTCACCGTCCGCGCCGCCCGCGGCAAGTTCGAGCGCAAGAAGCCCCACGTTAACATCGGCACCATCGGCCACGTCGACCACGGCAAGACCACCCTCACCGCCGCCCTCACCATGGCCCTCGCCTCCCTCGGCAACAGCGCCCCCAAAAAATACGACGAGATCGACGCCGCCCCGGAGGAGCGCGCCCGCGGTATCACCATCAACACCGCCACCGTCGAATACGAGACCGAGAACCGCCACTACGCCCACGTCGACTGCCCCGGCCACGCCGACTACGTCAAAAACATGATCACCGGCGCCGCCCAGATGGACGGCGCCATCCTCGTCGTCTCCGGCGCCGACGGGCCTATGCCCCAAACCAAAGAACACATTCTCTTGGCCAAACAAGTCGGCGTCCCCAACATTGTCGTCTTCCTCAACAAACAGGACCAGGTTGATGACGAGGAGCTTCTTCAGTTAGTTGAATTGGAGGTTCGCGAGCTTCTTTCCTCGTACGAGTTCCCCGGCGACGATGTTCCGATTATCTCCGGTTCCGCTTTGCTTGCTTTGGAAGCTTTGATGGCCAACCCTGCCATCAAGCGCGGCGAAAACCAATGGGTTGATAAAATTTACGAGCTTATGGATGCTGTGGATAACTACATTCCCATCCCTCAGCGTCAAACTGAACTTCCCTTTTTGCTGGCCATTGAGGATGTTTTCACCATCACCGGTCGCGGAACTGTCGCCACCGGAAGGGTTGAGAGAGGTACCATTAGGGTTGGAGAGACTGTTGATATTGTTGGTGTTAAGGAAACTAGGAACACCACTGTGACTGGGGTGGAAATGTTTCAGAAGATTTTGGATGAGGCTTTGGCTGGGGACAATGTGGGGTTGTTGCTTAGGGGTATTCAGAAGACTGATATTCAGAGAGGGATGGTTTTGGCTAAGCCTGGAACCATTACCCCTCACACCAAGTTTTCCGCAATTGTATATGTTTTGAAGAAGGAAGAGGGTGGCAGGCACTCTCCGTTCTTTGCCGGGTACCGGCCTCAGTTCTACATGAGGACTACCGATGTTACTGGCAAGGTAACTGCCATTACGAATGACAGAGATGAGGAGTCCCAGATGGTTATGCCGGGCGACCGCGTTAAGATGGTGGTTGAACTTATTGTGCCTGTGGCTTGTGAACAAGGAATGAGGTTTGCTATTAGAGAAGGAGGCAAAACTGTTGGAGCTGGTGTTATCCAATCCATCATTGAGTAA | 1443 | 0.5426 | MAISSAAASTSKLSYPQHIHHSSPSPSSNCLFLKTHTPSTTHLSSSFIHPSTILPLPPAAATTLRRSFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNIVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPAIKRGENQWVDKIYELMDAVDNYIPIPQRQTELPFLLAIEDVFTITGRGTVATGRVERGTIRVGETVDIVGVKETRNTTVTGVEMFQKILDEALAGDNVGLLLRGIQKTDIQRGMVLAKPGTITPHTKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTAITNDRDEESQMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE | 480 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gma17g01162 | 480 | TIGRFAM | small_GTP: small GTP-binding protein domain | 84 | 216 | IPR005225 | GO:0005525 | |
Gma17g01162 | 480 | SUPERFAMILY | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 379 | 479 | IPR009001 | - | |
Gma17g01162 | 480 | CDD | EFTU_II | 292 | 378 | IPR033720 | - | |
Gma17g01162 | 480 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 122 | 137 | IPR031157 | - | |
Gma17g01162 | 480 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 81 | 285 | IPR000795 | GO:0003924|GO:0005525 | |
Gma17g01162 | 480 | SUPERFAMILY | Translation proteins | 286 | 382 | IPR009000 | - | |
Gma17g01162 | 480 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 79 | 307 | IPR027417 | - | |
Gma17g01162 | 480 | PANTHER | ELONGATION FACTOR TU-RELATED | 37 | 480 | - | - | |
Gma17g01162 | 480 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Gma17g01162 | 480 | CDD | EFTU_III | 381 | 475 | - | - | |
Gma17g01162 | 480 | PRINTS | GTP-binding elongation factor signature | 85 | 98 | IPR000795 | GO:0003924|GO:0005525 | |
Gma17g01162 | 480 | PRINTS | GTP-binding elongation factor signature | 129 | 137 | IPR000795 | GO:0003924|GO:0005525 | |
Gma17g01162 | 480 | PRINTS | GTP-binding elongation factor signature | 149 | 159 | IPR000795 | GO:0003924|GO:0005525 | |
Gma17g01162 | 480 | PRINTS | GTP-binding elongation factor signature | 165 | 176 | IPR000795 | GO:0003924|GO:0005525 | |
Gma17g01162 | 480 | PRINTS | GTP-binding elongation factor signature | 202 | 211 | IPR000795 | GO:0003924|GO:0005525 | |
Gma17g01162 | 480 | Gene3D | Translation factors | 287 | 415 | - | - | |
Gma17g01162 | 480 | TIGRFAM | EF-Tu: translation elongation factor Tu | 73 | 480 | IPR004541 | GO:0003746|GO:0005525|GO:0006414 | |
Gma17g01162 | 480 | Pfam | Elongation factor Tu C-terminal domain | 379 | 478 | IPR004160 | - | |
Gma17g01162 | 480 | Gene3D | - | 73 | 284 | IPR027417 | - | |
Gma17g01162 | 480 | Pfam | Elongation factor Tu GTP binding domain | 81 | 282 | IPR000795 | GO:0003924|GO:0005525 | |
Gma17g01162 | 480 | Hamap | Elongation factor Tu [tuf]. | 72 | 480 | IPR004541 | GO:0003746|GO:0005525|GO:0006414 | |
Gma17g01162 | 480 | Gene3D | Translation factors | 419 | 479 | - | - | |
Gma17g01162 | 480 | Pfam | Elongation factor Tu domain 2 | 306 | 374 | IPR004161 | GO:0005525 | |
Gma17g01162 | 480 | CDD | EF_Tu | 82 | 284 | IPR041709 | - | |
Gma17g01162 | 480 | PANTHER | ELONGATION FACTOR TU | 37 | 480 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gma17g01162 | Gma-Chr17 | 10128149 | 10129970 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gma17g01162 | 79 | 478 | Eukaryotic Initiation Factors Gene Family | AT5G60390 | 28.864 | 6.95e-45 | 161 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gma17g01162 | K02358 | - | gmx:100791320 | 831.632 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gma17g01162 | 17 | 10128149 | 10129970 | Gma17g01162 | 17 | 10128149 | 10129970 | ECH | |
Gma17g01162 | 17 | 10128149 | 10129970 | Gma05g00400 | 05 | 3763139 | 3764973 | GST | |
Gma17g01162 | 17 | 10128149 | 10129970 | Gma04g01830 | 04 | 48406021 | 48408115 | PCT | |
Gma17g01162 | 17 | 10128149 | 10129970 | Gma06g01579 | 06 | 15337159 | 15338598 | PCT | |
Gma04g01830 | 04 | 48406021 | 48408115 | Gma17g01162 | 17 | 10128149 | 10129970 | PCT | |
Gma06g01579 | 06 | 15337159 | 15338598 | Gma17g01162 | 17 | 10128149 | 10129970 | PCT |