Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01158 ATGGAAAACATAGACACCTCAAAATTTTCGCACCAATCTCAAAACCAAAACAAGAATAATATTCCCTTGATGTCTATTGAAATATTAGACAAGTCCTATGAGAAGAGAGTCGTGAATAAGGTTCCAAAAGTAGCAAACAAGAGTGAGAAAAAGTTTCTTGGGGTGAGACAAAGACCTTCAGGAAGATGGATTGCTGAGATCAAGGACTCCTCTCAGAAACTAAGACTTTGGTTAGGAACTTTTGACAAAGCAGAAGAAGCTGCCTTGGCTTATGACTGTGCTGCAAGGCTTCTTAGAGGGAGAAATGCCAAAACAAACTTTCCAAACAACCCTGGAATCATGAACACTACTCATGAAGAAGATTGCAGCATTTTGGTCATGCCTTGGAAAAACCAGATCATGGTGAGAGACGAATTTGACACCCTTGTTGAGGAAACTATAGTTTGTTCCATTCCTGAACAAGGTTCTGGTTGTTGTGGAATTTCATTTGGAAGTTCTAAGGTTTATTCTTCTGTTGTTGTAGCTCCTTCTTTCAGTGCTTCTCATGATGAAACCTCCTAA 561 0.3939 MENIDTSKFSHQSQNQNKNNIPLMSIEILDKSYEKRVVNKVPKVANKSEKKFLGVRQRPSGRWIAEIKDSSQKLRLWLGTFDKAEEAALAYDCAARLLRGRNAKTNFPNNPGIMNTTHEEDCSILVMPWKNQIMVRDEFDTLVEETIVCSIPEQGSGCCGISFGSSKVYSSVVVAPSFSASHDETS 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01158 186 Gene3D AP2/ERF domain 50 109 IPR036955 GO:0003700|GO:0006355
Gma17g01158 186 ProSiteProfiles AP2/ERF domain profile. 51 108 IPR001471 GO:0003700|GO:0006355
Gma17g01158 186 SMART rav1_2 51 114 IPR001471 GO:0003700|GO:0006355
Gma17g01158 186 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110-LIKE 149 185 - -
Gma17g01158 186 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110-LIKE 1 126 - -
Gma17g01158 186 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 126 - -
Gma17g01158 186 Pfam AP2 domain 51 100 IPR001471 GO:0003700|GO:0006355
Gma17g01158 186 CDD AP2 50 110 IPR001471 GO:0003700|GO:0006355
Gma17g01158 186 SUPERFAMILY DNA-binding domain 51 109 IPR016177 GO:0003677
Gma17g01158 186 PRINTS Ethylene responsive element binding protein signature 74 90 IPR001471 GO:0003700|GO:0006355
Gma17g01158 186 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
Gma17g01158 186 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 149 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01158 Gma-Chr17 10097001 10097633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01158 51 110 AP2-EREBP Transcription Factor Family AT5G19790 71.667 3.78e-26 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma17g01158 AP2 1.9e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01158 - K09286 gmx:100800716 345.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01158 17 10097001 10097633 Gma17g01158 17 10097001 10097633 ECH
Gma17g01158 17 10097001 10097633 Gma05g00149 05 1467102 1467716 GST