Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01154 ATGGAGCCCATGGACATCGTTGGTAAATCAAAGGAAGACGCTTCGCTTCCTAAAGCAACAATGACAAAAATTATTAAAGAGATGTTACCCCCAGATGTACGTGTTGCAAGAGATGCCCAAGATCTATTGATTGAGTGTTGTGTAGAGTTTATAAACCTTGTCTCGTCAGAATCCAATGAAGTCTGTAATAGAGAGGATAAACGGACAATTGCACCTGAGCATGTATTGAAGGCTCTACAGGTTCTAGGATTTGGTGAGTACATTGAAGAAGTTTATGCAGCATATGAACAGCACAAACTGGAGACCATGCAGGACTCTTTAAGAGGGGGTGGTGGTGGTGGTAAATGGAACAATGGAGCTGAGATGACTGAGGAAGAAGCATTAGCAGAGCAGCAAAGGATGTTTGCAGAGGCACGTGCTAGGATGAATGGTGGAGCCATTGCTTCTAAGCAGCCAGATGCTGACCAAAGTTTAGATAGCTAA 483 0.4348 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNREDKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKLETMQDSLRGGGGGGKWNNGAEMTEEEALAEQQRMFAEARARMNGGAIASKQPDADQSLDS 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01154 160 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Gma17g01154 160 SUPERFAMILY Histone-fold 12 147 IPR009072 GO:0046982
Gma17g01154 160 Gene3D Histone, subunit A 4 147 IPR009072 GO:0046982
Gma17g01154 160 PANTHER PROTEIN DR1 HOMOLOG 1 159 IPR044255 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01154 Gma-Chr17 10037385 10041746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01154 1 156 CCAAT-DR1 Transcription Factor Family AT5G23090 84.177 1.41e-94 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gma17g01154 CBFD_NFYB_HMF 4.1e-22 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01154 K21751 - gmx:100798439 311.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01154 17 10037385 10041746 Gma17g01154 17 10037385 10041746 ECH
Gma17g01154 17 10037385 10041746 Gma05g00144 05 1408639 1413056 GST