Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01151 ATGGCAGAAACAGAAGACAAAACCCTTCAAGCCTCGCCCATGAACGAAACCAAGAAGATGAAGAAGAATAAGAATAAGAAGAAGAGCGACAAAAAAAGACCTCGGGAGATTGCTACCGAGGAGCGTCCAGAGGAAGAGGAGAATGAGAATAATACAGATAGCGATGGAGAATCCTCGAAGAAGAAGAAGAAGAAGAAGGTGGAAGGAGAAAGTGAAGTGAAAGAGAAAAAGGTGAAGAACAATGGTGGCTCTGGAATTATGAGCACTGAGTCATTTGAATCTCTCGGATTGTCTGAACCTACTTATAAAGCCATTATGGATATGGGATTCCACCACATGACTCAGATTCAAGCGAGGGCAATTCCACCGCTTTTGATTGGAAAAGATGTTCTTGGTGCTGCAAGGACTGGTTCTGGAAAAACTCTTGCCTTCTTAATTCCTGCTGTGGAGCTGTTGTACAATGTTAAATTTACGCCTCGTAATGGAGCTGGTGTTATTGTTATATGCCCTACTAGAGAGCTTGCAATACAGACACATGCTGTGGCCAAGGAGCTGCTCAAGTATCATTCACAAACTCTTGGATTGGTTATTGGAGGTTCAGCTAGAAAAATTGAAGCTGAACGCATTGCTAAAGGGATAAATTTATTGGTAGGAACTCCTGGTCGTCTTCTAGATCATCTTCAAAACACAAAAGGATTCATATATAAAAACTTGAAGTGCCTCATGATTGATGAAGCTGACAGGATTTTGGAAGCAAACTTTGAGGAGGAAATGAAGCAGATTATCAAGATCCTTCCAAAGAATAGGCAAACAGCTTTATTTTCGGCTACACAAACAAAGAAGGTTGAGGATCTTGCCCGTCTGTCATTTCAGACGACTCCTATCTATATTGATGTAGATGATGGGAGAACCAAGGTCACAAATGAGGGATTGCTTCAGGGTTATGTTGTGGTtccctgtgccaagcgatttattgttctctattcctttttgaagagacaccagtcaaaaaaagtgatggtttttttctcttcatgcaactctgtcaaattCCACGCAGACATTCTTAATCTTATTCAATTGAATTGCTCGAGTATTCATGGAAAACAAAAGCAGCAGTCCCGAACAACTACCTTCTTTGACTTCTGCAAAGCAGAAAAGGGGATCTTGCTCTGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGCTGTGgactggattgtgcagtatgatccacctgatgaaccaaaggaatatattcacagggttggtagaacagctcgtggtgaaggtgggaaaggaaatgctttgcttttcctgattcctgaagaattgcaatttcttcgctatctgaagGCAGCTAAGGTCCCTGTTAAAGAGTATGCATATGATGAAAAGAAGGTGGCAAACGTACAATCTCACCTGGAGAATTTGGTGGTCAACAATTTCTATTTGAACAAGATGGCAAAAGAAGCTTATAGATCATACATATTAGCATACAATTCTCATTCTATGAAGGATATATTCAACATTCACCATCTTGATTTGCAGGCTGTTGCTTCTTCGTTCTGTTTTTCAAACCCACCAAATGTGAGTCTAAACATAAACAGCAGTAAGCAAAGGAATAAAATGCGTAAAGTTGATGGAAGTAGACATGGATTCAGTGGCGACAATCCTTATGGAAAGAGAAATGCTGATGATAAGCGGCAGTTTGTGAGGGAATCACCACAGAAAAGAATCAAGCAAAAGAAAAATGGGTATGAGGCTCTGAAGGGAAAAGCCATATTTGGATTTTCCAGATACTATAGTGTATGTAGTGTGTGTGGTTTCTTGGTGCCAAAGAGTGGAAGTGTGCTTTGGGAGATGATGGGGTTGGCCACGTTGGACTTAAAAAGAGACCTGAAGTTGAAAATGAAGTTTGTTAACGAGGAAGAGGGAGAGGATTGTGGAGCACGTTTTGGGCGTCGTGGGTGGGGTTTGATACCTGAGGATAATAGTGGTCTTTGA 2010 0.3637 MAETEDKTLQASPMNETKKMKKNKNKKKSDKKRPREIATEERPEEEENENNTDSDGESSKKKKKKKVEGESEVKEKKVKNNGGSGIMSTESFESLGLSEPTYKAIMDMGFHHMTQIQARAIPPLLIGKDVLGAARTGSGKTLAFLIPAVELLYNVKFTPRNGAGVIVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGSARKIEAERIAKGINLLVGTPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKILPKNRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRTKVTNEGLLQGYVVVPCAKRFIVLYSFLKRHQSKKVMVFFSSCNSVKFHADILNLIQLNCSSIHGKQKQQSRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYAYDEKKVANVQSHLENLVVNNFYLNKMAKEAYRSYILAYNSHSMKDIFNIHHLDLQAVASSFCFSNPPNVSLNINSSKQRNKMRKVDGSRHGFSGDNPYGKRNADDKRQFVRESPQKRIKQKKNGYEALKGKAIFGFSRYYSVCSVCGFLVPKSGSVLWEMMGLATLDLKRDLKLKMKFVNEEEGEDCGARFGRRGWGLIPEDNSGL 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01151 669 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 83 298 IPR027417 -
Gma17g01151 669 CDD SF2_C_DEAD 311 441 - -
Gma17g01151 669 Pfam DEAD/DEAH box helicase 114 285 IPR011545 GO:0003676|GO:0005524
Gma17g01151 669 MobiDBLite consensus disorder prediction 541 579 - -
Gma17g01151 669 MobiDBLite consensus disorder prediction 1 87 - -
Gma17g01151 669 MobiDBLite consensus disorder prediction 562 579 - -
Gma17g01151 669 Pfam Helicase conserved C-terminal domain 326 430 IPR001650 -
Gma17g01151 669 SMART helicmild6 350 431 IPR001650 -
Gma17g01151 669 Pfam Domain of unknown function (DUF4217) 472 532 IPR025313 -
Gma17g01151 669 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 121 296 IPR014001 -
Gma17g01151 669 Gene3D - 36 300 IPR027417 -
Gma17g01151 669 SMART DUF4217_3 471 534 IPR025313 -
Gma17g01151 669 CDD DEADc_DDX18 101 298 IPR044773 GO:0003724|GO:0005524
Gma17g01151 669 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 323 470 IPR001650 -
Gma17g01151 669 MobiDBLite consensus disorder prediction 53 79 - -
Gma17g01151 669 Gene3D - 311 550 IPR027417 -
Gma17g01151 669 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 445 IPR027417 -
Gma17g01151 669 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 90 118 IPR014014 GO:0003724
Gma17g01151 669 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 242 250 IPR000629 -
Gma17g01151 669 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 61 569 - -
Gma17g01151 669 PANTHER RNA HELICASE 61 569 - -
Gma17g01151 669 SMART ultradead3 109 314 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01151 Gma-Chr17 10010230 10018589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01151 85 450 Eukaryotic Initiation Factors Gene Family AT3G19760 28.338 3.95e-47 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01151 K13179 - gmx:100797375 1036.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01151 17 10010230 10018589 Gma17g01151 17 10010230 10018589 ECH
Gma17g01151 17 10010230 10018589 Gma05g00141 05 1388745 1393916 GST