Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01126 ATGTCTAATCCCAACTGGGAAGCGGATAAAATGTTAGATTTGTATATTCACGATTATCTCACGAAGAGACAATTACATGCTACTGCAAGAATATTTCAGGCCGAAGGAAATGTTTCAACGGATCCTATTGTTATAGATGCACCTAGTGGTTTTCTTTTTGAGTGGTGGTCTGTCTTCTGGGACATATATATTGCCAGGGCAAATCAGAAGCTCCAAGATACAGCTCAGAAGCACCAAGAAGCAGCAGTATCTTACAGTAAGAGTCAACAAATTAAGGCTCGACTAATGCAGAAGCAACTGGAGCAAGAGCTTCAGAATACAAACCAGAATCAGCAAATGCAATTCTTATTGCAAAGACATGCTCAGCAGCAGCAGCAACGTCTGCGTGGAACTCAACTTATTAGTGGCAGTGCTAGCTGTCCTATTAGCAGTGATCCTTTGATGAGGCAGAACCGGGCAACTTCTAATGCTAATACAACAAAAACTTATGAAGACAGGTTGAAGCTTCCACTTCAGAAAGATGCCTTAGATGACACAAGCATTCAGCAAAAAGTAATTGATGATGTTGCTCAGCTTCTAAACCCAAACCATGCCTTATTGTTGAAAGCAGCAGCAACAACTGGTGAACAGGCTACAGGACAGACATTGCTCAGTGCACCTAGTATTTTACAGGGGGATATTCAGCATGTCCAAAATCTGAACCAGAAGCTTCCAGGGTCTACACAAGACTTAAACAGTGATATGAATGCAATGATGAGGTCTCAAGCTGTTGTTTCAGAAGGATCCTTTATCAGTTGTCATGGTTCAAATCAAGGTGGTAGCAATTTGACTCTTAAAGGATGGCCTCTAGCAGGACTGGATGAGCTCCGCTCAGGATTTCTCCAGCCGAATAATTTGATGCAGTCTTCACAATCTTTCCATCAACTTTCTGTACGGCAGCAACTTATGCTTCAGGCACAACAAAATTTGATTTCTCCTTCTGCCAGTGATTTTGAGAGCAGAAGACTCAGGATGCTTGTTAATGATCAAAACATGGCTCTTTTGAAAGATGGCCAATCAAATTCTTTAGGTGATTTAATTCCTGATAACAGGTCACCCGCTCAAGTTGGTTCCTCAGTGCTGCCTCATCCTGACTCAGATATGTTCCTTAAGCAACAAATTCAAAAGAGTAGTCAGCAGCATCAACAATGTTCACAGCACCCTCTTTCAAGCCATCAGTCTGAATCTCTCCAGAAGCAAGAAAAAAATGGTCCTGGAACCATGACTGTAGAGGGCAATGTGTCCAATACCTTACAAGGAAACAACCAGGTTTCCATAAGTAAAACAGGGCGGAAGAGAAAACCAGCATCATCTTCTGGTCCTGCCAATAGTTCTGGAACTGCAAACACTACAGGACCACCTATCAGTTCACCTAAAACACCATCTACACAAACACCTGCAGACATGATGACAGTGTCAACTCTGCAACAGAATGTTCCTTCCTCTAAGTCATCATTTATGTTTGGTACTGATGGTTTGGGCCCACTTACGTCAGCACAGAATCAATTGGCTGATATGGATCACCTTGTGGGTGATGGATGTTTGGGCGACAATGTTGAGTCATTCTTATCTCCTGATGATACAGATGTTAGCAAAAAAATTGGCAAAGAAATCTCATTCAAGGATATCAAGCATATAGGGGCAAGTTTGCATAAAGTTGAGTGTTGTCACTTCTCATCAGATGGAAAACTTCTTGCTACAGGTGGCCACGATAATAAGGCTTCTTTGTGGTGCACAGAATTGTTTAACCTGAAATCTACACTTGAAGAGCACAGTGAATGGATAACTGATGTTCGATTTTGTCCAAGCATGTTGCGTGTTGCTACATCCTCAGCAGACAAAACTGTTAGGGTTTGGGATGTTGATAATCCAAGTTATTCTCTTCGTACATTCACAGGACATGCAACAACTGTGATGTCACTAGATTTTCACCCTAGCAAAGATGACCTTATTTGCTCTTGTGACAATAGTGAGATAAGATACTGGAGTATTAAAAATGGTAGTTGTACTGGGGTTTTCAAGGGTGGTGCAACTCAGATGAGATTTCAACCTTGCTTGGGAAGGCTTCTTGCAGCTGCAGTGGATAATTTCGTATCCATTTTTGATGTGGAAACCCTGGGTTGCAGACTTAAATTACAGGGCCATAATAATCTTGTCCGATCTGTGTGCTGGGATTTGTCTGGAAAATTTTTGGCTTCTCTCAGTGATGATATGGTTAGAGTATGGAATGTTGCGTCCGGTGGCAAAGGGGAATGCATTCACGAGTTGAAAGATTGTAGGAACAAATTCAGCACCTGTGTTTTCCATCCCTTCTATCCTTTGCTGGTCATTGGCTGCCATGAGACTATTGAGCTGTGGGACTTCGGTGATAACAAGACAATGACTCTGCATGCACATGACGATGTTGTATCTTCCTTGGCAGTATCGAATGTTACTGGATTGGTGGCTTCAACTAGTCATGACAAGCATTTCAAGATCTGGAAGTGA 2526 0.4208 MSNPNWEADKMLDLYIHDYLTKRQLHATARIFQAEGNVSTDPIVIDAPSGFLFEWWSVFWDIYIARANQKLQDTAQKHQEAAVSYSKSQQIKARLMQKQLEQELQNTNQNQQMQFLLQRHAQQQQQRLRGTQLISGSASCPISSDPLMRQNRATSNANTTKTYEDRLKLPLQKDALDDTSIQQKVIDDVAQLLNPNHALLLKAAATTGEQATGQTLLSAPSILQGDIQHVQNLNQKLPGSTQDLNSDMNAMMRSQAVVSEGSFISCHGSNQGGSNLTLKGWPLAGLDELRSGFLQPNNLMQSSQSFHQLSVRQQLMLQAQQNLISPSASDFESRRLRMLVNDQNMALLKDGQSNSLGDLIPDNRSPAQVGSSVLPHPDSDMFLKQQIQKSSQQHQQCSQHPLSSHQSESLQKQEKNGPGTMTVEGNVSNTLQGNNQVSISKTGRKRKPASSSGPANSSGTANTTGPPISSPKTPSTQTPADMMTVSTLQQNVPSSKSSFMFGTDGLGPLTSAQNQLADMDHLVGDGCLGDNVESFLSPDDTDVSKKIGKEISFKDIKHIGASLHKVECCHFSSDGKLLATGGHDNKASLWCTELFNLKSTLEEHSEWITDVRFCPSMLRVATSSADKTVRVWDVDNPSYSLRTFTGHATTVMSLDFHPSKDDLICSCDNSEIRYWSIKNGSCTGVFKGGATQMRFQPCLGRLLAAAVDNFVSIFDVETLGCRLKLQGHNNLVRSVCWDLSGKFLASLSDDMVRVWNVASGGKGECIHELKDCRNKFSTCVFHPFYPLLVIGCHETIELWDFGDNKTMTLHAHDDVVSSLAVSNVTGLVASTSHDKHFKIWK 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01126 841 ProSiteProfiles Trp-Asp (WD) repeats profile. 559 590 IPR001680 GO:0005515
Gma17g01126 841 Pfam LisH 10 36 IPR006594 GO:0005515
Gma17g01126 841 Gene3D - 691 841 IPR015943 GO:0005515
Gma17g01126 841 ProSiteProfiles Trp-Asp (WD) repeats profile. 809 841 IPR001680 GO:0005515
Gma17g01126 841 Gene3D - 542 690 IPR015943 GO:0005515
Gma17g01126 841 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 644 681 - -
Gma17g01126 841 Coils Coil 90 126 - -
Gma17g01126 841 PANTHER LISH-SSDP-WD40 1 841 - -
Gma17g01126 841 SMART WD40_4 762 800 IPR001680 GO:0005515
Gma17g01126 841 SMART WD40_4 802 841 IPR001680 GO:0005515
Gma17g01126 841 SMART WD40_4 594 633 IPR001680 GO:0005515
Gma17g01126 841 SMART WD40_4 637 676 IPR001680 GO:0005515
Gma17g01126 841 SMART WD40_4 552 591 IPR001680 GO:0005515
Gma17g01126 841 SMART WD40_4 718 756 IPR001680 GO:0005515
Gma17g01126 841 SMART WD40_4 679 715 IPR001680 GO:0005515
Gma17g01126 841 MobiDBLite consensus disorder prediction 356 479 - -
Gma17g01126 841 MobiDBLite consensus disorder prediction 383 479 - -
Gma17g01126 841 ProSiteProfiles Trp-Asp (WD) repeats profile. 644 685 IPR001680 GO:0005515
Gma17g01126 841 ProSiteProfiles Trp-Asp (WD) repeats profile. 601 642 IPR001680 GO:0005515
Gma17g01126 841 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 841 IPR044716 GO:0003714
Gma17g01126 841 ProSitePatterns Trp-Asp (WD) repeats signature. 620 634 IPR019775 -
Gma17g01126 841 ProSiteProfiles Trp-Asp (WD) repeats profile. 725 760 IPR001680 GO:0005515
Gma17g01126 841 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Gma17g01126 841 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 809 841 - -
Gma17g01126 841 MobiDBLite consensus disorder prediction 356 372 - -
Gma17g01126 841 Pfam WD domain, G-beta repeat 564 590 IPR001680 GO:0005515
Gma17g01126 841 Pfam WD domain, G-beta repeat 597 633 IPR001680 GO:0005515
Gma17g01126 841 Pfam WD domain, G-beta repeat 721 756 IPR001680 GO:0005515
Gma17g01126 841 Pfam WD domain, G-beta repeat 805 841 IPR001680 GO:0005515
Gma17g01126 841 Pfam WD domain, G-beta repeat 641 676 IPR001680 GO:0005515
Gma17g01126 841 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 601 636 - -
Gma17g01126 841 SUPERFAMILY WD40 repeat-like 564 841 IPR036322 GO:0005515
Gma17g01126 841 CDD WD40 556 841 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01126 Gma-Chr17 9689521 9697805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01126 576 801 Miscellaneous Gene Families AT5G08390 26.957 1.34e-18 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Gma17g01126 WD40 0.026 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01126 - - gmx:100801265 1602.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01126 17 9689521 9697805 Gma17g01126 17 9689521 9697805 ECH