Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01122 ATGGAATCACCCTCAGAACTAAGCCTTGATTGCAAGCCTCAGAGCTATTCCTTGCTACTCAAATCATTTGGAGATCAGACTGATCAGACCTACAAGCTTGAAGAATTCCTCTCTCGCTTGGAGGAAGAACGTCTCAAGATTGATGCTTTCAAGCGCGAGCTTCCTCTCTGCATGCAACTTCTCACCAACGCCATGGAAGCTTCAAGGCAGCAACTACAGGCCTATAAAGTAAACCATGGAACAAAGCCAGTTCTCGAAGAATTCATACCCATGAAGCACTTAGCCTCAGATCAAAGCTCAGAGAAGGCAACAAACATGTCTGACAAGGCAAATTGGATGACATCTGCACAATTATGGAGCCAAGCAAGTGAAGGAACAAAACAACAACCAACAATCACAACACCTAAAGAATCTGATATAGGCTTCAGCATAAGTCCAAAGCTGGCTCTAGACAACAAACAGAGGAACGGTGGAGGAGCCTTTCTTCCATTCTCCAAAGAAAGAAACTCTTGCCAGGGCTCTACATTGCGGCCTCTTCCTGAACTGGCTCTTGCCTATGCGGAGAAAGAAATGGAGGACAAGAAATTACGTCCAGAGGTAGAAATTAAGGGAGTTTCGTGCCAGAGTAAGAAGGAGAATTCGGGAAGTGATGGAACTGTGGTTGATCAAGGAAAAGGTGGTAGCCCAGTTGCATCGTCTCATGCAACAACAACCACAACCACTAGCAGTGCACAAACTCATAGGAAAGCTAGAAGGTGTTGGTCACCAGACCTGCACCGAAGATTTGTTAATGCCCTTCAAATGCTTGGTGGATCACAAGTGGCGACCCCAAAGCAGATAAGGGAGTTGATGAAGGTTGACGGTTTGACCAATGATGAAGTTAAAAGCCATTTGCAGAAATATAGGCTTCACACAAGAAGACCCAGTCCAAGTCCTCAAGCGGTTGGAGCAGCACCACAGCTTGTGGTCCTCGGCGGAATCTGGGTCCCACCGGAATATGCCACGGCAGCACACACAGCCACCCCTACTCTCTACGGCGCCCACCCTACCTCCCACGCGCCGCCGCCACATTACTGCGCTGCCACTCCCATGCCACAAGACTTCTACACCACGGCGCCGCCACAGCCGCTGCTTCCGCCGCCTCCGCCGCACCACAACGCTCTGCACCACCTGCACATGTACAAGGCGGCACCGCACGGCCAAGGCTCGCCGGAATCCGACGTTCCCAGCAACGGAGAGCGATCGGAGAGTATTGAGGATGGGAAGTCGGAGAGTAGCAGCTGGAAGGGGGAGAATGAAGGGGAGAGGAAAGGGATTAGTAAAGGGAGCAATGGGAGTGAGATCACTCTCAAGTTCTAG 1359 0.5063 MESPSELSLDCKPQSYSLLLKSFGDQTDQTYKLEEFLSRLEEERLKIDAFKRELPLCMQLLTNAMEASRQQLQAYKVNHGTKPVLEEFIPMKHLASDQSSEKATNMSDKANWMTSAQLWSQASEGTKQQPTITTPKESDIGFSISPKLALDNKQRNGGGAFLPFSKERNSCQGSTLRPLPELALAYAEKEMEDKKLRPEVEIKGVSCQSKKENSGSDGTVVDQGKGGSPVASSHATTTTTTSSAQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQAVGAAPQLVVLGGIWVPPEYATAAHTATPTLYGAHPTSHAPPPHYCAATPMPQDFYTTAPPQPLLPPPPPHHNALHHLHMYKAAPHGQGSPESDVPSNGERSESIEDGKSESSSWKGENEGERKGISKGSNGSEITLKF 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01122 452 SUPERFAMILY Homeodomain-like 246 307 IPR009057 -
Gma17g01122 452 MobiDBLite consensus disorder prediction 397 452 - -
Gma17g01122 452 Coils Coil 33 53 - -
Gma17g01122 452 MobiDBLite consensus disorder prediction 206 252 - -
Gma17g01122 452 MobiDBLite consensus disorder prediction 207 221 - -
Gma17g01122 452 MobiDBLite consensus disorder prediction 229 249 - -
Gma17g01122 452 Gene3D - 248 306 - -
Gma17g01122 452 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 452 - -
Gma17g01122 452 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 249 304 IPR006447 GO:0003677
Gma17g01122 452 MobiDBLite consensus disorder prediction 412 440 - -
Gma17g01122 452 Coils Coil 58 78 - -
Gma17g01122 452 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 246 306 IPR017930 -
Gma17g01122 452 Pfam Myb-like DNA-binding domain 251 302 IPR001005 -
Gma17g01122 452 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 452 IPR044787 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01122 Gma-Chr17 9642615 9645261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01122 1 452 G2-like Transcription Factor Family AT2G03500 50.620 2.44e-130 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gma17g01122 Myb_DNA-binding 9.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01122 - - gmx:100797015 878.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01122 17 9642615 9645261 Gma17g01122 17 9642615 9645261 ECH
Gma17g01122 17 9642615 9645261 Gma04g01439 04 35340936 35343618 PCT
Gma17g01122 17 9642615 9645261 Gma06g01921 06 21727413 21730481 PCT
Gma04g01439 04 35340936 35343618 Gma17g01122 17 9642615 9645261 PCT
Gma06g01921 06 21727413 21730481 Gma17g01122 17 9642615 9645261 PCT