Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01120 ATGAACGAAGTTTTCAACATTGGTTCAGACTATCAGATTCAGAGCTATAGAGACACAGTTGTTGCAGGCATTAAAAGCAAAGGCAGCAGTTACAACAATCCGCACGGATATATACATGGCGTAAAGCACAAGAACTACTTGGCAAGTGCAATGAAGGATCCAGTGGAGGATCAAGTGAAATCTAGGAGGGCAGTGCAGAAACCCAAGGATTTTAGAAGAAGAGATAGAAGAAGAAACCAATGCAAACAAGAGAAATTACAAGACACACAATTGGTTTCCTCTGCTTGCAAAAGTCTTGTGTTTCCTGCAAGGCCTGGCTATGGCCAGCTGGGGACAAAGTGTCTGGTCAAAGCCAACCACTTCCTGGCAGATATATCCGCATCTGACTTGAGCCATTACAATGTTAAAATAACACCTGAGGTTACTTCTCGTAAAACAAGCAAAGCCATCATAGCTGAGTTAGTGAGGCTTCACAGGAACACTGATTTGGCAATGAAGCTTCCTGTTTATGATGGAGGAAGAAATCTCTACACTGCTGGCTTGCTTTCTTTTGCATACAAAGAGTTCACCATACTATTGAGAGAGGATGATGAGGGCACTGGTTCTACCAGGGAAAGAGAATTTGAAGTGGTGATCAGGTTTGCAGCTCGTGTTAGCATGAATCAGTTACGTGAGCTTCTGAGTGGCAAGCAAGTGGACACTCCACAAGAAGCACTTACTGTCATTGACACTGTATTGAGGGAGCTTGCAGCTCAGAGCTACGTGTCAATTGGGAGGTTTCTATATTCTCCGGATTTAAGAAAACCACAGCAGCTAGGTGGTGGCCTGGAATCGTGGTGCGGCTTCTATCAGAGTATAAGGCCAACTCAGATGGGATTGTCACTTAATATTGACATGTCATCAATGGCGTTTATTGAACCACTTCCTGTAATTGACTTTGTTGCTCAAATTTTGGGAAAAGATGTGCTCTCAAAGCCATTGTCAGATGCAGATCGTGTCAAGATTAAGAAGGCCTTAAGAGGTGTGAAAGTTGAGGTTACACATAGAGGAAGTTTTCGAAGGAAGTACAGGATTACAGGATTGACATCACAGCCTACAAGGGAGCTTAATTTCCCCGTCGATGAGAAAATGAACATGAAATCAGTAGTTGATTACTTTCAAGAAATGTATGGATATACAATCATATATTCTCATCTACCCTGCCTTCAAGTAGGAAGCCAAAAGAAGGTGAACTATTTGCCTATGGAGGCATGCAAGATAGTTGGGGGTCAGAGATATACAAAAGGGCTTAACGAAAAGCAGATAACTTCTCTGCTAAAGGTCTCATGCCAGAGACCACGTGAACAAGAGACAGATATTCTACAGCAGACAATTCACCAAAATGATTATGAGTATAATCCCTATGCCAAGGAGTTTGGGATCAGCATTGACAGCAAGCTTGCATCAGTTGAGGCTCGGGTTCTTCCTGCTCCATGGTTGAAATATCACGAGACTGGAAGGGAGAAAGAATACCTGCCACAAGTTGGTCAATGGAACATGATGAACAAGAAAGTTATAAACGGAAGCACTGTAAGATATTGGGCTTGTATTAATTTCTCACGAAGTATCCAAGAAAGTACTGCTCGCGGGTTTTGCCAACAGTTAGTTCAAATATGCCAAATCTCAGGCATGGAATTTAGTCAAGACCCTGTGATTCCAATATATTCAGCAAAACCTGATCTGGTAAAGAAAGCCTTGAAGTATGTACATTCTGCTGTACTTGATAAACTTGGTGGGAAAGAACTAGAGTTGTTGATTGCCATTCTTCCAGACAACAATGGCTCTCTGTATGGCGATCTCAAAAGAATCTGTGAAACCGATCTGGGGTTGATTTCTCAGTGCTGTCTTACAAAACACGTATTCAAGATCAATAGGCAGTATTTGGCAAATGTGGCACTAAAGATCAATGTCAAGATGGGAGGAAGGAACACAGTACTTTTGGATGCCCTAAGTTGGAGGATCCCATTGGTTAGTGACATTCCAACAATAATTTTTGGAGCAGATGTAACACATCCAGAATCTGGAGAGGACCCTTGTCCATCCATTGCTGCTGTTGTAGCCTCCCAGGACTGGCCGGAAGTAACAAAGTACGCAGGATTGGTATGCGCTCAGCCTCATCGTGAGGAACTCATTCAAGATCTTTTTAAATGTTGGAAGGATCCTCATCATGGTATAGTTTATGGTGGCATGATCAGAGAGCTGTTACTCTCTTTTAAGAAGGCAACCGGACAAAAACCATTGAGGATAATATTTTACAGGGATGGGGTAAGTGAAGGACAGTTCTACCAGGTTTTGTTGTATGAGCTTGATGCCATCCGTAAGGCTTGTGCATCTTTGGAACCTAGTTACCAACCTCCGGTAACATTTGTTGTGGTTCAAAAGCGACATCACACTAGACTCTTCTCAAACAATCATGACGACAGAAATAGCACTGATAAGAGTGGGAATATCTTACCTGGTACTGTGGTGGATTCTAAGATCTGTCATCCTACGGAATTCGACTTCTATTTATGCAGTCATGCGGGAATTCAGGGTACAAGTAGACCAGCTCATTATCATGTTCTGTGGGACGAGAACAATTTCACTGCTGATGAGATCCAATCTCTGACCAACAACTTGTGCTACACCTATGCAAGATGTACACGATCAGTTTCTGTAGTGCCTCCTGCGTACTATGCTCATTTGGCAGCTTACAGAGCTCGATTCTACATGGAACCTAATGTCCATGAAATTGCTAAATCTCGAGGTGCAAGGTCAAAAGATGAGTCAGTTCGGCCACTACCTGCTCTGAAAGAGAAGGTGAAGAATGTAATGTTTTATTGTTGA 2865 0.4258 MNEVFNIGSDYQIQSYRDTVVAGIKSKGSSYNNPHGYIHGVKHKNYLASAMKDPVEDQVKSRRAVQKPKDFRRRDRRRNQCKQEKLQDTQLVSSACKSLVFPARPGYGQLGTKCLVKANHFLADISASDLSHYNVKITPEVTSRKTSKAIIAELVRLHRNTDLAMKLPVYDGGRNLYTAGLLSFAYKEFTILLREDDEGTGSTREREFEVVIRFAARVSMNQLRELLSGKQVDTPQEALTVIDTVLRELAAQSYVSIGRFLYSPDLRKPQQLGGGLESWCGFYQSIRPTQMGLSLNIDMSSMAFIEPLPVIDFVAQILGKDVLSKPLSDADRVKIKKALRGVKVEVTHRGSFRRKYRITGLTSQPTRELNFPVDEKMNMKSVVDYFQEMYGYTIIYSHLPCLQVGSQKKVNYLPMEACKIVGGQRYTKGLNEKQITSLLKVSCQRPREQETDILQQTIHQNDYEYNPYAKEFGISIDSKLASVEARVLPAPWLKYHETGREKEYLPQVGQWNMMNKKVINGSTVRYWACINFSRSIQESTARGFCQQLVQICQISGMEFSQDPVIPIYSAKPDLVKKALKYVHSAVLDKLGGKELELLIAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKINRQYLANVALKINVKMGGRNTVLLDALSWRIPLVSDIPTIIFGADVTHPESGEDPCPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKCWKDPHHGIVYGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPSYQPPVTFVVVQKRHHTRLFSNNHDDRNSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYMEPNVHEIAKSRGARSKDESVRPLPALKEKVKNVMFYC 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01120 954 Pfam Piwi domain 598 917 IPR003165 GO:0003676
Gma17g01120 954 SMART DUF1785_2 255 307 IPR014811 -
Gma17g01120 954 PANTHER PROTEIN ARGONAUTE 10 58 953 - -
Gma17g01120 954 SMART PAZ_2_a_3 312 444 IPR003100 GO:0005515
Gma17g01120 954 Pfam N-terminal domain of argonaute 113 246 IPR032474 -
Gma17g01120 954 Gene3D - 666 954 IPR036397 GO:0003676
Gma17g01120 954 ProSiteProfiles Piwi domain profile. 597 918 IPR003165 GO:0003676
Gma17g01120 954 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 58 953 - -
Gma17g01120 954 Pfam Argonaute linker 1 domain 256 305 IPR014811 -
Gma17g01120 954 MobiDBLite consensus disorder prediction 57 84 - -
Gma17g01120 954 Pfam Argonaute linker 2 domain 451 495 IPR032472 -
Gma17g01120 954 CDD PAZ_argonaute_like 307 421 - -
Gma17g01120 954 SUPERFAMILY Ribonuclease H-like 587 918 IPR012337 -
Gma17g01120 954 SMART Piwi_a_2 597 918 IPR003165 GO:0003676
Gma17g01120 954 CDD Piwi_ago-like 467 917 IPR045246 -
Gma17g01120 954 SUPERFAMILY PAZ domain 303 462 IPR036085 GO:0005515
Gma17g01120 954 Pfam Mid domain of argonaute 506 583 IPR032473 -
Gma17g01120 954 Pfam PAZ domain 333 438 IPR003100 GO:0005515
Gma17g01120 954 ProSiteProfiles PAZ domain profile. 308 422 IPR003100 GO:0005515
Gma17g01120 954 Gene3D - 487 660 - -
Gma17g01120 954 Gene3D paz domain 302 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01120 Gma-Chr17 9606762 9623398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01120 101 954 Eukaryotic Initiation Factors Gene Family AT5G43810 74.362 0.0 1385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01120 K11593 - gmx:100798086 1789.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01120 17 9606762 9623398 Gma17g01120 17 9606762 9623398 ECH
Gma17g01120 17 9606762 9623398 Gma04g01437 04 35037808 35044639 PCT
Gma17g01120 17 9606762 9623398 Gma06g01924 06 21847171 21854369 PCT