Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01097 ATGAGTTTCTCTGACCATATTCCATCCTTCATGATGTCACCGCCGTCATTTTCCACAGACACGGATGCCATTGAAGTGAGGCTTCAATTTCCAATGAACAACGAATCGTTGGAGCCACATTCACCACAGGATCGACCCCCTTCGTTCAAGAGGGCAAGGACCTGTGATAACAGCCTCTCCAATGCAATGGCATGCCCTCCAAGGATGATTCAGCACCCTGCAGTTAACAAAGGAACGAGCCACATTTTCTTCAAGACCCGCATCTGTGCAAAGTTCAGAGTTGGTGCTTGTAGAAACGGCGAGAACTGCAATTTTGCACATGGGCTTGAGGACATGAGGCAGCCGCCACCAAATTGGCAAGAGCTTGTTGGGTTGCGCGGTGAGGAGCGGCCACCGATGGCGGGGGATTGGGATGATGACCAGAAAATCATACACAAGATGAAGCTGTGCAAGAAGTATTACAATGGGGAGGAATGCCCCTATGGTGATAAGTGTAGTTTTCTTCATGAAGACCCTGCCAGGTTCAGGGATGATTCGGTGAGGTACAGGGAGAGCACATCTATAAGCATTGGAACTAATGGATCCCCCAAGTCCTATGGTGATGCCTCTAATAATTTAGAAAGCAATAGGGCTGTGAATACTGGCTTAAATGTTTTCCGGGGGAATGTTAAATCTACCTATTGGAAGACTAAACTGTGCATCAAGTTTGAGACAACAGGCCACTGCCCCTTTGGGGATGACTGTCACTTTGCTCATGGGCAAGCAGAGTTACAAGTTCCTGGTGGTCGCACTGAGGCAGAAACTGCAGGTGTCAATCCAATCTCAACTAAAGCTACCATTCCAACCTTACCAAGAGCTACATCAGTTTCTTCTAATGATGCACCTCCTAGCCACAGAGCAAGTGTACCTCCAGCAAACGAAAAGGAACGAGATAAGAAGTATTTACTGAAGTGGAAAGGACACAAGAAGATCAACCGAATTTATGGTGACTGGCTTGACGATTTGCCGCTCGTTCACAACTTGCCAGTGTAG 1032 0.4748 MSFSDHIPSFMMSPPSFSTDTDAIEVRLQFPMNNESLEPHSPQDRPPSFKRARTCDNSLSNAMACPPRMIQHPAVNKGTSHIFFKTRICAKFRVGACRNGENCNFAHGLEDMRQPPPNWQELVGLRGEERPPMAGDWDDDQKIIHKMKLCKKYYNGEECPYGDKCSFLHEDPARFRDDSVRYRESTSISIGTNGSPKSYGDASNNLESNRAVNTGLNVFRGNVKSTYWKTKLCIKFETTGHCPFGDDCHFAHGQAELQVPGGRTEAETAGVNPISTKATIPTLPRATSVSSNDAPPSHRASVPPANEKERDKKYLLKWKGHKKINRIYGDWLDDLPLVHNLPV 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01097 343 SUPERFAMILY CCCH zinc finger 81 114 IPR036855 GO:0046872
Gma17g01097 343 SUPERFAMILY CCCH zinc finger 226 258 IPR036855 GO:0046872
Gma17g01097 343 SMART c3hfinal6 227 254 IPR000571 GO:0046872
Gma17g01097 343 SMART c3hfinal6 144 171 IPR000571 GO:0046872
Gma17g01097 343 SMART c3hfinal6 83 109 IPR000571 GO:0046872
Gma17g01097 343 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 84 108 IPR000571 GO:0046872
Gma17g01097 343 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 228 254 IPR000571 GO:0046872
Gma17g01097 343 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Gma17g01097 343 ProSiteProfiles Zinc finger C3H1-type profile. 144 172 IPR000571 GO:0046872
Gma17g01097 343 Gene3D - 221 259 - -
Gma17g01097 343 Gene3D - 141 173 - -
Gma17g01097 343 Gene3D - 76 114 - -
Gma17g01097 343 Pfam CCCH-type zinc finger 148 169 IPR041367 -
Gma17g01097 343 PANTHER CCCH ZINC FINGER/TIS11-RELATED 1 335 IPR045877 GO:0003729
Gma17g01097 343 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 1 335 - -
Gma17g01097 343 MobiDBLite consensus disorder prediction 276 309 - -
Gma17g01097 343 ProSiteProfiles Zinc finger C3H1-type profile. 227 255 IPR000571 GO:0046872
Gma17g01097 343 MobiDBLite consensus disorder prediction 276 297 - -
Gma17g01097 343 SUPERFAMILY CCCH zinc finger 144 171 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01097 Gma-Chr17 9388374 9391723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01097 229 258 C3H Transcription Factor Family AT1G68200 60.000 4.87e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma17g01097 zf-CCCH 9.1e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01097 - - gmx:100793865 715.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01097 17 9388374 9391723 Gma17g01097 17 9388374 9391723 ECH