Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01093 ATGGACGAAGATTCGCTCAAGCGCTACACCGATTGCGTTTATTTCTTGGCCTCTCCCCTCACTTGCAAGAAGGGGGCTGAATGTGAGTATCGGCATAATGAGATTGCGAGGCTTAACCCTAGGGATTGCTGGTACTGGCTATCTGGCCAATGCCTTAATCCAACCTGTGCATTTAGACACCCTCCATTGGATGGGCATACTGGAGCGCCAGTGCCATCTGAACCTACTCAAACTTCATTACCTGCAAACAAGACACTGGTTCCCTGTTATTTTTTCTTCAATGGATTCTGCAACAAAGGTGACAGATGCTCATTTTTGCATGGGCCTGATGATAGCATTTTTAATATAAAACCGGTGAAGAATGAGAATGGAAGCACTGATGCACTCAACCTAGAAAATAAAGCACCATCTGGAAATAGAACAGGTGTAACGTCAACACCAACTGATCGATCTGTAGCTGCACCAAAGAATTTGTCTGATCTTAAACATCAGCCTAAGGAAGATCATCAGCTGGAATTACCCAAAAATGTTAAGCAGCAAGGTGATTACCTAGAGTTATCTGCTTCAGAATATAAAGAAGCTGCTGTGAGTAGGTCAGACTCTTCAATTCCAGATGATGGCTTTGTTCATAATGTACCTCATTTATGCACTGGGCAGAGCTCAGAGGAGCAAGTAAATAGTCACATAGAGCCCGAGGAGTGGTGGGAATCATCCCCTCATTCCCCTGGATTTGATGTTCTTGTTCATGATGAAGTGGAGAACTTGGGTTATGAGGAAGATTCTGAATATTTACCAGTGGTTGATAGGGATGAGCAAGAGCTGAATGACCAGTACTTCAGATGTTTAGATAGAGATCTCATTCATGTTAATGGAAGAACAGTTCATGCTTATGCCACAGATGCATTCTTAGATCCTATATTGTCCAGGAAAAGGATTCGGACATCAGCTGAGATGGCTGCTTATGACAAGAATTTAGATCTTCGTGACCATCTGAGGAGACGTAGAGAAGTTAATGGTCCTCCTGTTACAGGTTTCTTAAGAAGACAAGAATCATCTCCTTTGATGGTTCAAAACCAGGAAAGGCATCTGAGGCATGGCATTGAGCAGCGGCCAAGTAGAAGACTGACATCACAACTGGGATATAGTGCTATAGATTCAACTGGAGAGGTTGAAACTCTGTCAATTGGTAACAAGCGCAGGTTATTCAGGCAGTCCCAGGCCCAGCAACATAGACCAAGGAAGAATTATATAGAAAAACTACCAAAACGGCAGTTTGTTTCATCTAAAATATCCAGGAAACCAGTTTTTAAACAAAGGGGACTTATTCACGAGTCTTCTACATTTTCAGGACCTAAGACTCTTGCAGAAATTAAAGAAGAGAAGATGAAGAAGAATGCTGAAGGAAGTTTACATTGGAAAAGCACATCAACTGATTTTCAGGATCCCAAACCTCTGAGTGAAATTCTCAAGGTCAAAAGGACCATGGATCAGTGA 1494 0.4237 MDEDSLKRYTDCVYFLASPLTCKKGAECEYRHNEIARLNPRDCWYWLSGQCLNPTCAFRHPPLDGHTGAPVPSEPTQTSLPANKTLVPCYFFFNGFCNKGDRCSFLHGPDDSIFNIKPVKNENGSTDALNLENKAPSGNRTGVTSTPTDRSVAAPKNLSDLKHQPKEDHQLELPKNVKQQGDYLELSASEYKEAAVSRSDSSIPDDGFVHNVPHLCTGQSSEEQVNSHIEPEEWWESSPHSPGFDVLVHDEVENLGYEEDSEYLPVVDRDEQELNDQYFRCLDRDLIHVNGRTVHAYATDAFLDPILSRKRIRTSAEMAAYDKNLDLRDHLRRRREVNGPPVTGFLRRQESSPLMVQNQERHLRHGIEQRPSRRLTSQLGYSAIDSTGEVETLSIGNKRRLFRQSQAQQHRPRKNYIEKLPKRQFVSSKISRKPVFKQRGLIHESSTFSGPKTLAEIKEEKMKKNAEGSLHWKSTSTDFQDPKPLSEILKVKRTMDQ 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01093 497 Gene3D - 2 63 - -
Gma17g01093 497 Gene3D - 75 139 - -
Gma17g01093 497 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Gma17g01093 497 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 87 109 IPR000571 GO:0046872
Gma17g01093 497 Pfam Zinc-finger containing family 7 63 IPR041686 -
Gma17g01093 497 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 279 496 - -
Gma17g01093 497 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 279 - -
Gma17g01093 497 MobiDBLite consensus disorder prediction 124 153 - -
Gma17g01093 497 MobiDBLite consensus disorder prediction 465 484 - -
Gma17g01093 497 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Gma17g01093 497 SUPERFAMILY CCCH zinc finger 83 108 IPR036855 GO:0046872
Gma17g01093 497 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32-LIKE 1 279 - -
Gma17g01093 497 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32-LIKE 279 496 - -
Gma17g01093 497 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Gma17g01093 497 SMART c3hfinal6 6 34 IPR000571 GO:0046872
Gma17g01093 497 SMART c3hfinal6 84 109 IPR000571 GO:0046872
Gma17g01093 497 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01093 Gma-Chr17 9364286 9366591 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma17g01093 zf-CCCH_3 4.8e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01093 - - gmx:100792282 991.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01093 17 9364286 9366591 Gma17g01093 17 9364286 9366591 ECH