Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01088 ATGCTGTGGTCTTATGCCTCGCACTATGTCCCTCCACAACACCGCACTAACAGCTTCCAAACCTTAACCGATGATTCAACCAGCCGTGGTGGCGCTAGACCACGTGACGGTGGCCGCGGTGGTTCCGGCAGCCGTGGGTTTTCTCGTCCCCGCATTCCTTCTAACCGGTTACCCGTGGAGGAACCACAAGACGGCAGCGACGCTATTAACTTCGACGCGTACGAGTCGGTACCGGTGGAGGCGAGTGGGAAGGACGTGCCACCGCCGGTGAACACCTTCAATGAAGCGGACTTGGACGAAGGTTTAAAGAGGAACATCGACCGATGCAAGTATGTGAAACCCACGCCGGTTCAGCGCCACGCGATTCCCATCGCGAGTGCGGGACGCGACCTAATGGCGTGCGCACAGACCGGTTCGGGCAAAACGGCAGCGTTTTGTTTTCCCATTATATCTGGGATTTTGAAGGGTCGTTCTCTTTCTGGGTTTTCATCAATGCCGGCTCGTGGTGCCGCTGTTGCATACCCCACTGCACTTATTCTGTCTCCTACCAGGGAGTTATCATGCCAGATACGCGATGAAGCGAATAAATATGCGCATCAAACTGGAGTGAAGGTTGTTGTTGCCTACGGTGGGGCTCCTATTACTCAGCAGCTGCGCCTTATGGAGAAAGGTGTTGATATATTGGTTGCAACTCCTGGGCGTTTGGTGGATATTATTGAAAGAGAAAGGGTTTCGTTGACAAAGATAAAGTATCTTGCTTTGGATGAGGCTGATCGTATGTTGGACATGGGTTTTGAACACCAAATACGCAAGATTGTGGAGCAAATGCAGATGCCCTCGCCAGGTATTAGGCAAACATTGTTGTTTAGTGCCACGTTTCCTAATGATATACAGAAGCTAGCATCGGACTTTTTATCCAACTACATATTCCTGTCTGTTGGAAGGGTTGGATCGAGTACTGAACTGATTGTGCAGAAGATTGAGCTTGTACAGGATATGGACAAAAGGGACCATCTTATTAATCATCTGCGACGTCAAAAGGTGCATGGGGCAAATGGGAAGCATGCTTTGACTCTTGTATTTGTTGAAACCAAAAGAGGAGCGGATGTTTTAGAAGGTTGGTTGTTGAGAAGTGGCTTTTCAGCTGTTGCCATACATGGTGACAAAGTTCAAATGGAAAGGGAACGGGCTTTAAGATCATTCAAATCTGGTTTGACTCCCATTTTGGTTGCAACTGATGTTGCTTCACGGGGATTGGATATCCCGCATGTGGCTCATGTTATAAACTTTGACTTGCCTAGAGACATTGATAACTACGTACATAGAATTGGAAGAACAGGCCGTGCAGGCAAATCTGGGTTAGCCACTGCCTTCTTCAGCGACAAGAATAGCCCTATTGCAAAGGCTCTTATTGGACTCTTGCAGGAAGCAAACCAAGAAGTTCCATCTTGGCTCAACCAATATGCTACTGAGGGTTCATCATCTGGTGGGGGTGGTCGTGGCTATGAAGCTCAGCGTTACCGCAGTGGCAGTTATGGTGGTCATGATTTCCGGAATGTCACTGAACCTGAGGTGCAGAATTACAACTGCTACAATACCAATGGCAATGCAGTTCAGTTTGTAGAGTCTTACACTGCTGATGATGCCTCTTACGTTGATACCTCCTATGACATCCAAAACTCCAATATAGATTGCTCTTTTGAATGTTTACATATAGCTTCTTCCGGCAGTTATAATCACACTGATTCTTGTGAGTTGAATGGAGGTGGTGGTAGGGTTGAAGAAGATGGGCCACGCGGTTATGCATCTATTGTTGCCACTGGATGGGATTAG 1833 0.479 MLWSYASHYVPPQHRTNSFQTLTDDSTSRGGARPRDGGRGGSGSRGFSRPRIPSNRLPVEEPQDGSDAINFDAYESVPVEASGKDVPPPVNTFNEADLDEGLKRNIDRCKYVKPTPVQRHAIPIASAGRDLMACAQTGSGKTAAFCFPIISGILKGRSLSGFSSMPARGAAVAYPTALILSPTRELSCQIRDEANKYAHQTGVKVVVAYGGAPITQQLRLMEKGVDILVATPGRLVDIIERERVSLTKIKYLALDEADRMLDMGFEHQIRKIVEQMQMPSPGIRQTLLFSATFPNDIQKLASDFLSNYIFLSVGRVGSSTELIVQKIELVQDMDKRDHLINHLRRQKVHGANGKHALTLVFVETKRGADVLEGWLLRSGFSAVAIHGDKVQMERERALRSFKSGLTPILVATDVASRGLDIPHVAHVINFDLPRDIDNYVHRIGRTGRAGKSGLATAFFSDKNSPIAKALIGLLQEANQEVPSWLNQYATEGSSSGGGGRGYEAQRYRSGSYGGHDFRNVTEPEVQNYNCYNTNGNAVQFVESYTADDASYVDTSYDIQNSNIDCSFECLHIASSGSYNHTDSCELNGGGGRVEEDGPRGYASIVATGWD 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01088 610 SMART ultradead3 110 326 IPR014001 -
Gma17g01088 610 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 465 IPR027417 -
Gma17g01088 610 MobiDBLite consensus disorder prediction 12 28 - -
Gma17g01088 610 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 25 531 - -
Gma17g01088 610 Pfam Helicase conserved C-terminal domain 336 450 IPR001650 -
Gma17g01088 610 Gene3D - 313 493 IPR027417 -
Gma17g01088 610 SMART helicmild6 369 450 IPR001650 -
Gma17g01088 610 CDD SF2_C_DEAD 323 459 - -
Gma17g01088 610 Gene3D - 55 312 IPR027417 -
Gma17g01088 610 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 335 489 IPR001650 -
Gma17g01088 610 MobiDBLite consensus disorder prediction 12 67 - -
Gma17g01088 610 CDD DEADc_DDX3_DDX4 92 317 IPR044763 GO:0003724|GO:0005524
Gma17g01088 610 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 122 311 IPR014001 -
Gma17g01088 610 Pfam DEAD/DEAH box helicase 115 300 IPR011545 GO:0003676|GO:0005524
Gma17g01088 610 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 91 119 IPR014014 GO:0003724
Gma17g01088 610 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 37-LIKE ISOFORM X1 25 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01088 Gma-Chr17 9330323 9332925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01088 91 483 Eukaryotic Initiation Factors Gene Family AT1G72730 31.980 5.70e-57 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01088 K11594 - gmx:100791226 1177.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01088 17 9330323 9332925 Gma17g01088 17 9330323 9332925 ECH
Gma17g01088 17 9330323 9332925 Gma13g01488 13 29551527 29554175 GST