Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01078 ATGCTTGAATTATTGTTGTACAGGACAAAGTTTCCAGAATCATGCATGGATGCAAAGGAAGCTTTTGCACTAGCATTACGAGCAATAACCTTCTTTTCTCCTTGGCCATCTATTAGTACCAGTTTATCATCCATGGTTGGTTGTAGCTTTGCATTTGAGGTGACCGGAGGATCATCTCGCCCTGCAGTCCATACCACTAACCAACCAAATTGCAACGACAAAGACATTGCCTTGCCCCGCAAAGGCAGTAAAAGTTCATGGGCATCAAGTTCTGGCCATTTTGCTTTCAGGTTTTACTCTCAAGGTAATGGCTTCGCTGATGGAATATGGCTGATCAGTGGTAGTCCACCTGAAAAAACTATTGTCTGGAATGCTAACCGTGATAACCCCCCGCTTCCCTCTAGTTCCAAGTTGAACTTGACCGGCACCGGTCTGCGGCTTTTCACAAATGGGAACGAAAGCCAAGATCTCATTCCAAATCTTACAGCAGTAACTTGCGCTTCCATGCTTGATTCCGGCAACATTGTACTCTATAGTAATGATACTGAAACCGTTGTCTGGCAAAGCTTTGATCATCCAACTGACACCATGTTAGGAGTTCAGAATTTAACTAACTCTGACACTCTGGTTTCTAGTGTGTCCAGATTTGACCATTCCAGTGGACGTTTCTTTTTCATCATGCAAGCTGACGCAAACCTCGTTGCTTACCCTATGCACCACCAAATAAGTCCCCAAGATGCTTACTGGGCTTCAAAAACTGCAGGTTCTTCTTTCCAACAGCTCAGTCTTGATATTTTACTGCTCCAGCTTAACTGGCGATGCCGTGTGAGTGTTTTCCTGAATGATATTACTACCATTGCTCGAACACATCATAGGAATTTGGTTAAGCTCATTGGTTTTTGCATCAATGGATCTGGGAAGCTTCCTGTTTACGAATACATCAGCAACGGGTCTCTTGCAAGTTTTCTCTTCAACGATGAGAAACACATATCTCGGAGAGACACACTGAAAattgcattagacattgccagaggagtgctGCTGCTAAAGTCTGACCATTCAAGAATGAGAAAAGAGGATGATGGGACAAGCAAGTACTTGACACCTGAATGGCAGAAGGATGCACCAGTATCAGTAAAACTTGACATTTACAGTTTTGGGATGGTACTACTGGAGATTGTCTGCCGCAGAAGCAGCATAGATTGTTTCCTCATCGGAGGAGATACATCTTTCCAGCTGGGTATATCATTGCTTTGCAGCAGGACAGTTAAACAAGCTTGTTAA 1284 0.426 MLELLLYRTKFPESCMDAKEAFALALRAITFFSPWPSISTSLSSMVGCSFAFEVTGGSSRPAVHTTNQPNCNDKDIALPRKGSKSSWASSSGHFAFRFYSQGNGFADGIWLISGSPPEKTIVWNANRDNPPLPSSSKLNLTGTGLRLFTNGNESQDLIPNLTAVTCASMLDSGNIVLYSNDTETVVWQSFDHPTDTMLGVQNLTNSDTLVSSVSRFDHSSGRFFFIMQADANLVAYPMHHQISPQDAYWASKTAGSSFQQLSLDILLLQLNWRCRVSVFLNDITTIARTHHRNLVKLIGFCINGSGKLPVYEYISNGSLASFLFNDEKHISRRDTLKIALDIARGVLLLKSDHSRMRKEDDGTSKYLTPEWQKDAPVSVKLDIYSFGMVLLEIVCRRSSIDCFLIGGDTSFQLGISLLCSRTVKQAC 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01078 427 Pfam Protein tyrosine and serine/threonine kinase 278 352 IPR001245 GO:0004672|GO:0006468
Gma17g01078 427 SMART blect_4 82 193 IPR001480 -
Gma17g01078 427 SUPERFAMILY alpha-D-mannose-specific plant lectins 120 253 IPR036426 -
Gma17g01078 427 PANTHER S-RECEPTOR KINASE-LIKE PROTEIN 80 265 - -
Gma17g01078 427 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 348 402 - -
Gma17g01078 427 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 279 350 - -
Gma17g01078 427 Gene3D Transferase(Phosphotransferase) domain 1 353 412 - -
Gma17g01078 427 Gene3D - 80 191 IPR036426 -
Gma17g01078 427 Gene3D Transferase(Phosphotransferase) domain 1 272 352 - -
Gma17g01078 427 PANTHER S-RECEPTOR KINASE-LIKE PROTEIN 279 350 - -
Gma17g01078 427 PANTHER S-RECEPTOR KINASE-LIKE PROTEIN 348 402 - -
Gma17g01078 427 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 80 265 - -
Gma17g01078 427 Pfam D-mannose binding lectin 120 205 IPR001480 -
Gma17g01078 427 Gene3D - 192 271 IPR036426 -
Gma17g01078 427 SUPERFAMILY Protein kinase-like (PK-like) 275 398 IPR011009 -
Gma17g01078 427 ProSiteProfiles Bulb-type lectin domain profile. 74 190 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01078 Gma-Chr17 9260462 9262466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01078 279 412 Receptor kinase-like Gene Family AT4G23220 31.034 2.67e-19 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gma17g01078 PK_Tyr_Ser-Thr 1.2e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01078 - - palz:118040382 189.504