Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01060 ATGTGCTTAAGAAAGTGTGCCCAACTTCTGCGAaatcagTTTTCTACAATGGGAAGGAAAAAGACAGAGGATGCTGGCCCATCTGCGAAGGTAAAGGCTGGTAGCAAAGATCCTCCTAAGAAGGAAAAAATTTCTGTGTCTGCCATGCTGGCCAGTATGGATGAAAAGCCTGATAAACCTAAAAAGGTCCCTTCTTCCTCCAGTAAGCCGAAGCCGAAATCTGCTCCAAAAGCTTCCACATACACCGACGGAATTGATCTTCCTCCATCCGACGATGAAGATGATGATGATCTCTTGGAAGAGGGGGAAGCCAAAAGGTCCAGTCAGCAGCAGCAAAGGGTTGATTTGAAGCCACTTGATGTGCCTATTGCTGATAAAGAGTTGAAAAAGCGCGAAAAGAAGGATCTTTTAGCCGCACATGCTGCTGAGCAGGCAAAGAAGGAGGCTCTTAGGGATGACCACGATGCTTTCACTGTGGTCATTGGAAGCCGGGCTTCGGTGCTTGATGGAGGAGATGATGCTGATGCTAATGTCAAAGATATAACAGTAGAAAATTTCTCCGTGTCTGCACGGGGTAAAGAACTTCTGAAAAATGCAACAGTGAAGATATCTCACGGGAAGAGGTATGGTTTGGTTGGGCCCAATGGAAAAGGAAAGTCCACGCTGTTGAAACTTCTTGCTTGGAGGAAGATACCGGTACCTAAGAATATCGATGTCCTTCTGGTTGAGCAGGAGGTAGTTGGTGATGATAAAACAGCTCTTGAAGCTGTTGTTTCAGCTAATGACGAACTTGTTAAAATTCGACAAGAAGTTGCATCTCTGCAGAATGCAGCTTCTGTTGAAGACAAAGATAATGATGAGGAAGACGAGACAGGAGAGAAGCTAGCAGAGCTATATGAAAAACTACAGCTGATGGGATCTGATGCTGCTGAAGCTCAAGCATCAAAGATATTAGCTGGTTTAGGTTTTACAAAGGACATGCAAGCCCGTCCTACAAAATCCTTTAGTGGTGGCTGGAGGATGAGAATTTCTTTAGCTCGAGCACTTTTTGTGCAACCAACTCTATTATTGCTTGATGAACCCACAAATCATCTTGACCTGAGGGCTGTTCTCTGGTTGGAAGAGTATTTGTGCCGTTGGAAGAAAACTCTGGTGGTTGTCTCACATGATAGGGATTTTCTCAATACAGTGTGTACTGAGATTATTCATCTCCATGATTTGAAACTTCATTTCTATCGTGGAAATTTTGATGATTTTGAGAGCGGGTACGAACAGCGTCGTAAAGAGATGAATAAGAAGTATGATATTTATGCCAAGCAATTGCAAGCTGCTAAAAGAAGTGGAAACCAGGCTCAGCAAAAAAAGGTTAAGGATCAAGCAAAGTTTGCAGCAGCTAAGGAAAAAAGCAAGGGAAAGGGCAAGGGCAAGGTTGACGAGGATGAGGCCCCACCAGAGGCACCTCAGAAGTGGAGGGATTACAGCGTGGAATTTCACTTTCCGGAACCTACTGAGCTCACACCCCCACTTCTGCAGCTTATTGAAGTCAGCTTTAGCTACCCAAACCGGGAGGATTTCAGGCTCTCAAATGTTGATGTTGGAATTGATATGGGGACTCGTGTTGCGATTGTTGGGCCTAATGGAGCTGGAAAATCTACATTGCTGAATCTTCTAGCTGGTGATTTGGTTCCTTCCGAGGGTGAAATTCGAAGGAGTCAGAAGTTGAGGATAGGAAGATATTCCCAACACTTTGTGGACCTTCTAACAATGGATGAAACAGCTGTGCAGTATCTTCTGCGTCTCCATCCAGATCAGGAGGGACTTAGCAAGCAGGAGGCTGTCCGTGCAAAACTTGGTAAGTTTGGGCTACCAAGTCATAACCATCTTACTCCTATTGCCAAACTATCAGGAGGGCAGAAAGCTCGGGTGGTCTTCACATCTATCTCCATGTCAAATCCACACATTTTATTGTTAGATGAACCCACCAATCATCTGGACATGCAAAGTATTGATGCATTGGCCGATGCACTGGATGAATTCACCGGTGGAGTTGTTCTTGTTAGTCATGATTCAAGATTGATATCACGTGTATGTGAGGATGAAGAAAGGAGTCAAATCTGGGTTGTCGAAGAGGGCACTGTCAAAAATTTCCCAGGAACATTTGAGGATTACAAGGACGACTTGCTGAGAGAGATTAAAGCTGAAGTTGATGATTGA 2214 0.4435 MCLRKCAQLLRNQFSTMGRKKTEDAGPSAKVKAGSKDPPKKEKISVSAMLASMDEKPDKPKKVPSSSSKPKPKSAPKASTYTDGIDLPPSDDEDDDDLLEEGEAKRSSQQQQRVDLKPLDVPIADKELKKREKKDLLAAHAAEQAKKEALRDDHDAFTVVIGSRASVLDGGDDADANVKDITVENFSVSARGKELLKNATVKISHGKRYGLVGPNGKGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANDELVKIRQEVASLQNAASVEDKDNDEEDETGEKLAELYEKLQLMGSDAAEAQASKILAGLGFTKDMQARPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDLKLHFYRGNFDDFESGYEQRRKEMNKKYDIYAKQLQAAKRSGNQAQQKKVKDQAKFAAAKEKSKGKGKGKVDEDEAPPEAPQKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPSEGEIRRSQKLRIGRYSQHFVDLLTMDETAVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSNPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEERSQIWVVEEGTVKNFPGTFEDYKDDLLREIKAEVDD 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01060 737 Coils Coil 427 447 - -
Gma17g01060 737 SMART AAA_5 536 712 IPR003593 -
Gma17g01060 737 SMART AAA_5 205 407 IPR003593 -
Gma17g01060 737 CDD ABCF_EF-3 510 712 - -
Gma17g01060 737 Pfam ABC transporter 196 363 IPR003439 GO:0005524
Gma17g01060 737 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 510 735 IPR003439 GO:0005524
Gma17g01060 737 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 415 IPR027417 -
Gma17g01060 737 Pfam ABC transporter 527 662 IPR003439 GO:0005524
Gma17g01060 737 Gene3D - 475 736 IPR027417 -
Gma17g01060 737 MobiDBLite consensus disorder prediction 459 489 - -
Gma17g01060 737 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 489 722 IPR027417 -
Gma17g01060 737 ProSitePatterns ABC transporters family signature. 335 349 IPR017871 GO:0005524
Gma17g01060 737 PANTHER - 21 737 - -
Gma17g01060 737 Gene3D - 178 470 IPR027417 -
Gma17g01060 737 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 21 737 - -
Gma17g01060 737 Coils Coil 257 277 - -
Gma17g01060 737 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 181 438 IPR003439 GO:0005524
Gma17g01060 737 MobiDBLite consensus disorder prediction 445 489 - -
Gma17g01060 737 MobiDBLite consensus disorder prediction 13 120 - -
Gma17g01060 737 CDD ABCF_EF-3 181 408 - -
Gma17g01060 737 Coils Coil 133 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01060 Gma-Chr17 9076300 9079911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01060 509 713 Calmodulin-binding Proteins AT2G36910 29.004 8.10e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01060 K06184 - gmx:100806226 1278.85