Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01056 ATGGAGCTTCAACTGGCTCTCGCTCTCCCAATCAATCCCACCTATCATAAAAAACGTACCTTCTCCCAACTCCTCATGATGGACCATGCAGCACCACCAGAAAGCACCCTCACCGACCATGTTATGCTTCCTACTCTGTCTCTCCTCCCTTTAACCCCAAACCACCACCATGATGATGATCACCACAGTCAATGCTCTAACATCACCAAGGATGATGAGGAGGAGGAGTCTGTAGTGGGTTGGCCACCAGTAAACTATCATTGGAGGAAGAAACTTCGTGTGGACGAGGTTGTAGGGAATAATAATAATAATAATCACATGGTATCGGTTGCTGATCATCGTCATCATAGTGTTTACGTGAAGGTGAAGATGGAGGGTGTGGGAATTGCACGGAAGGTTGATCTCAGCATGCACCAATCATTTCACACGCTCAAGCAAACCTTGATGGACATGTTTGGAAAATGTAATATTCAACAATCAAACAACTATGAACTGGCTTATCTGGACAAAGAAGGTGACTGGCTTCTCGCACAAGATCTACCATGGAGAAGTTTTGTTGGGTGTGCGCGAAGACTCAAATTGGTGAAGAGCAGCAGATAA 600 0.4533 MELQLALALPINPTYHKKRTFSQLLMMDHAAPPESTLTDHVMLPTLSLLPLTPNHHHDDDHHSQCSNITKDDEEEESVVGWPPVNYHWRKKLRVDEVVGNNNNNNHMVSVADHRHHSVYVKVKMEGVGIARKVDLSMHQSFHTLKQTLMDMFGKCNIQQSNNYELAYLDKEGDWLLAQDLPWRSFVGCARRLKLVKSSR 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01056 199 Gene3D - 111 199 - -
Gma17g01056 199 ProSiteProfiles PB1 domain profile. 117 199 IPR000270 GO:0005515
Gma17g01056 199 PANTHER AUXIN-RESPONSIVE PROTEIN IAA20 1 197 - -
Gma17g01056 199 SUPERFAMILY CAD & PB1 domains 114 194 - -
Gma17g01056 199 Pfam AUX/IAA family 25 159 IPR033389 -
Gma17g01056 199 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 197 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01056 Gma-Chr17 9039237 9040246 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01056 118 195 B3 DNA Binding Superfamily AT1G19850 34.568 1.46e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gma17g01056 AUX_IAA 1.2e-20 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01056 K14484 - gmx:100804096 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01056 17 9039237 9040246 Gma17g01056 17 9039237 9040246 ECH
Gma17g01056 17 9039237 9040246 Gma13g01401 13 28723243 28724527 GST