Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01054 ATGAATATGAAAGTTGTTGTTGTGAGCATGGAGAACGAGAAGAAGAAGTGCGGTTGCTGGGCTGTCCTCAAACGCGGCGTTAGAGGTGCGTGCAAACCTTCTTCAGCTTCCAGAGACTCTCCTAACACTATCCCTCGTACTAGTCTCGTTTATGATGCAGCAACCGAGACAAGATACTTGAATGCTAGCAATAGAGAACTATGCCCTCCAAATGAAGCTCGATTATCTTCTGATAATCCTGATCCCCCATCTCAGGAGAATAAGGTTCCTTGCCAGCTCCTTCAATTTACATTTCAAGAACTAAAGGCTGCAACTGGGAATTTCAGACCCGATAGCATTCTTGGGGAGGGTGGCTTTGGTTATGTTTTCAAAGGTTGGATTGAGGAAGATGGAACGGCACCGGCGAAACCTGGGTCAGGGATTACAGTGGCTGTCAAAAGCTTGAAGCCAGATGGCCTTCAGGGCCATAGAGAATGGGTGGCTGAAGTTGACTTTCTTGGACAgcttcaccatcctaaccttgtgaaacttattggttactgcattgaagatgatcagaggcttcttgtttacgagtttatgACCCGTGGAAGTCTAGAAAATCATCTATTCAGAAGAACTGTACCTCTTCCGTGGTCCAACAGGATTAAGATTGCCCTTGGTGCAGCAAAAGGATTGGCCTTCCTCCATAATGGTCCCGAACCAGTCATTTATAGAGATTTTAAAACATCTAACATCTTGCTTGATACGGAGTATAATGCGAAGCTTTCAGATTTTGGTCTTGCAAAAGCAGGGCCTCAAGGAGACAAAACACATGTTTCTACCAGGGTAGTTGGAACTTATGGTTATGCTGCTCCAGAATATGTCATGACAGgacacttgacagctaaaagtgatgtttatagctttggagttgtgttacttgagatattaacaggaagaagatcaatggacaaGAAGCGCCCGAGTGGGGAACAAAATCTTGTTACATGGGCTAGGCCATACTTAGCTGACAAGCGAAAACTGTTCCAACTCGTGGATCCTCGCCTTGAACTAAATTATTCTCTAAAAGGAGTGCAGAAGATTTCCCAGTTAGCTTATAATTGCCTTACTAGAGACCCCAAATCCCGTCCTAACGTGGATGAAGTTGTGAAGGCTCTGACTCCATTGCAGGATCTTAATGACCTTGCAATCTTGTCTTATCACTCTCGCTTGTCTCAACAAGGTAGACGGAAGAAGAAAGATGGAACTCCACAGTTCACATACACACAATCCAAGAGCATGAGGGCTTCTCCCTTGAATACCGGCAAGCAGCGTCAATGA 1323 0.3998 MNMKVVVVSMENEKKKCGCWAVLKRGVRGACKPSSASRDSPNTIPRTSLVYDAATETRYLNASNRELCPPNEARLSSDNPDPPSQENKVPCQLLQFTFQELKAATGNFRPDSILGEGGFGYVFKGWIEEDGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTVPLPWSNRIKIALGAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYVMTGHLTAKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVTWARPYLADKRKLFQLVDPRLELNYSLKGVQKISQLAYNCLTRDPKSRPNVDEVVKALTPLQDLNDLAILSYHSRLSQQGRRKKKDGTPQFTYTQSKSMRASPLNTGKQRQ 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01054 440 Gene3D Transferase(Phosphotransferase) domain 1 194 404 - -
Gma17g01054 440 Gene3D Phosphorylase Kinase; domain 1 84 193 - -
Gma17g01054 440 PANTHER OS01G0588500 PROTEIN 78 409 - -
Gma17g01054 440 MobiDBLite consensus disorder prediction 68 87 - -
Gma17g01054 440 Pfam Protein tyrosine and serine/threonine kinase 112 387 IPR001245 GO:0004672|GO:0006468
Gma17g01054 440 CDD STKc_IRAK 114 390 - -
Gma17g01054 440 PANTHER OS01G0588500 PROTEIN-RELATED 78 409 - -
Gma17g01054 440 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Gma17g01054 440 MobiDBLite consensus disorder prediction 405 440 - -
Gma17g01054 440 SUPERFAMILY Protein kinase-like (PK-like) 90 393 IPR011009 -
Gma17g01054 440 ProSiteProfiles Protein kinase domain profile. 108 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g01054 440 MobiDBLite consensus disorder prediction 418 440 - -
Gma17g01054 440 ProSitePatterns Protein kinases ATP-binding region signature. 114 146 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01054 Gma-Chr17 9002429 9005854 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01054 96 387 Glycoside Hydrolase AT3G07070 56.081 3.31e-110 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gma17g01054 PK_Tyr_Ser-Thr 1.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01054 - - gmx:100785385 893.264
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01054 17 9002429 9005854 Gma17g01054 17 9002429 9005854 ECH
Gma17g01054 17 9002429 9005854 Gma13g01403 13 28763956 28768061 GST