Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01030 ATGGCTATCACTGTGTTGTTCTTGGTGCTGTTGCTGCAATTGTGGACAGTTTTTGGCTCTGAGGTTGTCCTACAGTCAAGGGATTGTGACTCTGATTGGGTGGCACATTCGTATTCTAGTCATGGTCAGGATCTGTTCTACATAAACGGCAATGTAGTGAACAAAGTTGCTTTCTGTGAGGCTCTCCAATTGTATATTGCAAAGGGGTGTGATGTGAAGGACTACTTTGGAAGTGTCAAATGTGTGGTGGATGACTCTTTTGTGAATTTACCTTTAAAGGCAGGGAGGAAACTTTTGAAGGATTTGAGCAATGAATCCACACCACGAGGAGATTCTAATCCTGTGTCATCCAAAGTAGTTGTTATTGGTGCGGGGGGAGCTTTGTTGGTGTGTTGTGCTGTTCTTTGTCCTTGTTTCTATGCCAAGAGACGTAAAGCAACTTCTCATGCTGTTCTGGCCAAGGACCCAAATTCAATGGATTCGGTTTCCTCCTTCGAAGCCTCCACTAATGATAAGATTCCAGCCAGTCCACTTCGGGTGCCACCTAGTCCGTCAAGATTCTCAATGTCTCCAAAACTCACTAGACTTAAATCGTTGCATCTCAATCTGAACCAAGTTACAAGAGCTACCCAAAACTTCTCAGAAACATTACAAATAGGAGAGGGAGGTTTTGGAACTGTCTACAAGGCCAAGTTGGAAGATGGCCGGGTTGTGGCTGTAAAACGTGCAAAAAAGGAACATTTTGATAGTTTGAGAACAGAATTCAGCAGTGAAATTGAACTTTTGGCCAAAATTGATCACCGAAACCTGGTGAAGCTACTAGGTTATATTGACAAAGGAAACGAACGCCTTCTTATTACAGAGTTTGTGCCAAATGGTACCCTTAGAGAACATTTGGATGGTATGCGTGGAAAAATCCTAGACTTCAATCAGCGCCTTGAAATTGCAATTGATGTTGCTCATGGCCTGACCTATCTGCATCTGTATGCAGAAAAGCAAATTATTCATCGAGATGTGAAATCATCCAATATTCTTCTGACAGAAAGCATGCGAGCCAAAGTTGCTGATTTTGGATTTGCAAGGCTAGGACCAGTGAACACTGATCAGACACACATTTCTACCAAAGTGAAGGGAACAGTCGGTTATTTGGACCCTGAGTATATGAAAACATACCAACTCACTCCCAAGAGTGACGTTTATTCATTTGGAATTTTGCTTTTAGAAATTGTGACAGGCCGCCGTCCTGTTGAGTTGAAGAAAACTGTTGAAGAGCGGGTTACACTCAGATGGGCCTTCAGGAAGTATAATGAAGGAAGTGTGGTGGAACTGGTGGATCCTCTAATGGAAGAAGCTGTAAACGGAGATGTTCTGATGAAAATGTTTGATTTGGCGTTTCAATGTGCAGCCCCCATTCGAACAGATAGACCTGACATGAAATCAGTGGGCGAACAATTGTGGGCTATAAGGGCAGATTACCTCAAGAGTGCAAGGAGAGAATAA 1500 0.4293 MAITVLFLVLLLQLWTVFGSEVVLQSRDCDSDWVAHSYSSHGQDLFYINGNVVNKVAFCEALQLYIAKGCDVKDYFGSVKCVVDDSFVNLPLKAGRKLLKDLSNESTPRGDSNPVSSKVVVIGAGGALLVCCAVLCPCFYAKRRKATSHAVLAKDPNSMDSVSSFEASTNDKIPASPLRVPPSPSRFSMSPKLTRLKSLHLNLNQVTRATQNFSETLQIGEGGFGTVYKAKLEDGRVVAVKRAKKEHFDSLRTEFSSEIELLAKIDHRNLVKLLGYIDKGNERLLITEFVPNGTLREHLDGMRGKILDFNQRLEIAIDVAHGLTYLHLYAEKQIIHRDVKSSNILLTESMRAKVADFGFARLGPVNTDQTHISTKVKGTVGYLDPEYMKTYQLTPKSDVYSFGILLLEIVTGRRPVELKKTVEERVTLRWAFRKYNEGSVVELVDPLMEEAVNGDVLMKMFDLAFQCAAPIRTDRPDMKSVGEQLWAIRADYLKSARRE 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01030 499 ProSitePatterns Protein kinases ATP-binding region signature. 219 245 IPR017441 GO:0005524
Gma17g01030 499 PANTHER NODULATION RECEPTOR KINASE-LIKE PROTEIN 12 498 - -
Gma17g01030 499 Pfam Protein tyrosine and serine/threonine kinase 218 485 IPR001245 GO:0004672|GO:0006468
Gma17g01030 499 ProSiteProfiles Protein kinase domain profile. 213 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g01030 499 Gene3D Transferase(Phosphotransferase) domain 1 290 498 - -
Gma17g01030 499 SMART serkin_6 213 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g01030 499 ProSitePatterns Serine/Threonine protein kinases active-site signature. 334 346 IPR008271 GO:0004672|GO:0006468
Gma17g01030 499 SUPERFAMILY Protein kinase-like (PK-like) 196 488 IPR011009 -
Gma17g01030 499 CDD STKc_IRAK 219 485 - -
Gma17g01030 499 PANTHER OS07G0166700 PROTEIN 12 498 IPR045272 GO:0004714|GO:0006468
Gma17g01030 499 Gene3D Phosphorylase Kinase; domain 1 184 289 - -
Gma17g01030 499 MobiDBLite consensus disorder prediction 163 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01030 Gma-Chr17 8764438 8767855 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01030 198 488 Receptor kinase-like Gene Family AT5G59700 46.048 3.04e-74 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Gma17g01030 PK_Tyr_Ser-Thr 1.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01030 - - gmx:100798260 968.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01030 17 8764438 8767855 Gma17g01030 17 8764438 8767855 ECH
Gma17g01030 17 8764438 8767855 Gma13g01424 13 29030144 29034605 GST