Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01009 ATGGGAAAGAAAAAGAAGCAAGTAGGAGAAATAGAGGAGGATGGTAAAGTTGGAGATAGCAGCCCCAGAGCATACGATAATGATACTATGGTGTTTATATCCATGTCTCAAGAATTGAAGAATGAGGGGAACAAGCTGTTCCAAAAGAGGGATCTTGAAGGAGCTATACTGAAATATGAAAATGCCCTCAAGTTGCTTCCCAAAAATCATATTGATGTGTCCTATCTGCGGAGCAACATGGCTGCATGTTACATGCAGATGGGACTCAGTGAGTTCCCAAGGGCAATTCATGAATGTGATTTGGCTCTTCAAGTGACACCGAAATATAGTAAAGCTCTGTTGAAGAGGGCAAGGTGCTATGAGGCTTTAAATAGGCCAGATTTAGCTCTGAGGGATGCCAGCACTGTTGTGAAGATGGAGCCAAATAATGTCATGGCATTGGAGATCTCAGAAAAGGTGAAAAGTGCACTTGAGGAGAAAGGATTGAGGGTAAACGATACAATAATTGAGTTGCCTCCAGATTATGTTGAACCTCCTGATGCTTTGCCTCCAGAAAAGGTATCGAAAGAGAAGAGGCGGAAGAAGAAGAAGAGCAATAAAGAGGAAGAGAAGGCTCCTGATGACAAAATTCTAGAAAAGCAAACCGAGGAGAAATTTGAGGAGAAGAAGGCTGAGGGCAGTATTGTAGTCGTAGAGAAGAAGATCAACACGTCCAAGAAGAAGAAGGCCAAGGGAAAAACTAATGAGAAGAAGACTGATATTAAGGAAGTTATAGAGGAAAGAAGTAATGGTAGAAGGAATCATGTTCCTAAGAAATCCGCTAAATTTATTTTTGGTGATGATATAAGATGTGCTGAACTGCCAATTAATTGTAGCCTTTTCCAGTTAAGAGAAGTTATTCAGGACCGATTCCCTAGCCTGGGAGCTGTTCTTGTCAAATACAGGGACCAAGAAGGCGATTTGGTCACAATTACTTCTGATGATGAATTAAGATGGGCTGAAGCAGGATCTAATGGTTCTATCCGACTGTACATAGTAGAAGCTACTCCTGAGCAGGATCCACTTTTTGAGAAATTTAAAGTGAAGGAGGTGGAAGTGGTTGGCGTTAACATCGCACCTGAGAATGGTTGTGTAGGAAAGGCAAAGGAAATTATTAGCTCTTCTTGCATTGAGGATTGGATAATTCAGTTTTCCAAACTGTTCAAGAACCATGTTGGGTTTGAATCTGACAGATATTTGGATTTCCATGAACTTGGGATGAAGCTCTATTCTGAGGCTTTGGAGGAGACGGTTACAAGCGAAGAAGCACAAGGCCTATTTGACATTGCAGGAGATAAGTTCCAAGAGATGACTGCTCTTGCATTGTTCAACTGGGGAAATGTGCATATGTCTAGGGTAAGGAAGAAAGTATATGTCACGGAAGATTCTTCTAAAGAACATCTTTGTGAACAAATCAAAAGTTCATATGAATGCGCACTGGAAGAATATGCAAAAGCGGGAGAAAAATATGCAGCAGCCATTAAAATTAAGTCAGATTTTCATGAAGGCTTCCTGGCACTAGGGCTGCAGCAGTTTGAGCAAGCAAAACTTTCTTGGTATCATGCACTTAGTAGTAATGCAGATTTACTTACATGGCCTTCCACTGAGGTTCTTCATCTTTACAACAATGCTGAAGAAAATATGGAAAAAGGAATGCAGATATGGAAAGAATCAGAAAAGCAGAACTTGAGTAAGACATCTAATTCAAATGATGTTAGATTGCATTTGCAGAACATGGGGTTGGATGGGCTTTTTAAAAATATATCCTTAGATGAACTTGCAGCACAGGAGGCACATATGGGGTCTCAAATAAATCTCCTATGGGGTACCATGCTATATGAACGCTCATTTGTGGAGTTCAAATTAGGGCTACCGATATGGCATGAATCTCTAGAAGTTGCAGTTGAGAAGTTTGAACTTGCAGGAGCTTCTCAAACAGATATAGCTGTAATTTTGAAGAACCACTGTTCAAATAATACTGCGGTAGATGGTCTTGCCTTCAAAATTGATGAAATAGTACAGGCATGGAATGAGATGTACAAAGCTAAAAAGTGGCAGAGTGCAGTTCCATCATTTCGTTTGGAACCCTTATTTAGAAGGCGAGTTTCAAAAACTTATCATGCCTTTGAGCTTGCATGA 2178 0.404 MGKKKKQVGEIEEDGKVGDSSPRAYDNDTMVFISMSQELKNEGNKLFQKRDLEGAILKYENALKLLPKNHIDVSYLRSNMAACYMQMGLSEFPRAIHECDLALQVTPKYSKALLKRARCYEALNRPDLALRDASTVVKMEPNNVMALEISEKVKSALEEKGLRVNDTIIELPPDYVEPPDALPPEKVSKEKRRKKKKSNKEEEKAPDDKILEKQTEEKFEEKKAEGSIVVVEKKINTSKKKKAKGKTNEKKTDIKEVIEERSNGRRNHVPKKSAKFIFGDDIRCAELPINCSLFQLREVIQDRFPSLGAVLVKYRDQEGDLVTITSDDELRWAEAGSNGSIRLYIVEATPEQDPLFEKFKVKEVEVVGVNIAPENGCVGKAKEIISSSCIEDWIIQFSKLFKNHVGFESDRYLDFHELGMKLYSEALEETVTSEEAQGLFDIAGDKFQEMTALALFNWGNVHMSRVRKKVYVTEDSSKEHLCEQIKSSYECALEEYAKAGEKYAAAIKIKSDFHEGFLALGLQQFEQAKLSWYHALSSNADLLTWPSTEVLHLYNNAEENMEKGMQIWKESEKQNLSKTSNSNDVRLHLQNMGLDGLFKNISLDELAAQEAHMGSQINLLWGTMLYERSFVEFKLGLPIWHESLEVAVEKFELAGASQTDIAVILKNHCSNNTAVDGLAFKIDEIVQAWNEMYKAKKWQSAVPSFRLEPLFRRRVSKTYHAFELA 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01009 725 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Gma17g01009 725 PANTHER PROTEIN CLMP1 3 724 IPR044517 -
Gma17g01009 725 SMART tpr_5 74 109 IPR019734 GO:0005515
Gma17g01009 725 SMART tpr_5 110 143 IPR019734 GO:0005515
Gma17g01009 725 SMART tpr_5 36 69 IPR019734 GO:0005515
Gma17g01009 725 CDD PB1 275 345 - -
Gma17g01009 725 MobiDBLite consensus disorder prediction 1 23 - -
Gma17g01009 725 SUPERFAMILY CAD & PB1 domains 273 356 - -
Gma17g01009 725 MobiDBLite consensus disorder prediction 196 213 - -
Gma17g01009 725 Gene3D Tetratricopeptide repeat domain 34 163 IPR011990 GO:0005515
Gma17g01009 725 SMART PB1_new 271 348 IPR000270 GO:0005515
Gma17g01009 725 Pfam PB1 domain 275 346 IPR000270 GO:0005515
Gma17g01009 725 MobiDBLite consensus disorder prediction 173 213 - -
Gma17g01009 725 MobiDBLite consensus disorder prediction 1 21 - -
Gma17g01009 725 ProSiteProfiles PB1 domain profile. 271 348 IPR000270 GO:0005515
Gma17g01009 725 Gene3D - 268 348 - -
Gma17g01009 725 PANTHER PROTEIN PHOX3 3 724 - -
Gma17g01009 725 SUPERFAMILY TPR-like 37 539 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01009 Gma-Chr17 8598221 8600482 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01009 - - gmx:100778972 1349.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01009 17 8598221 8600482 Gma17g01009 17 8598221 8600482 ECH
Gma17g01009 17 8598221 8600482 Gma13g01442 13 29187616 29191362 GST
Gma17g01009 17 8598221 8600482 Gma09g00848 09 12477909 12482496 PCT
Gma09g00848 09 12477909 12482496 Gma17g01009 17 8598221 8600482 PCT